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Bug 377555 - app-office/akonadi-server-1.6.0 fails to start with dev-db/mysql-5.5.15
Summary: app-office/akonadi-server-1.6.0 fails to start with dev-db/mysql-5.5.15
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo KDE team
URL:
Whiteboard:
Keywords: PMASKED
Depends on:
Blocks:
 
Reported: 2011-08-03 12:53 UTC by Jakub Caban
Modified: 2011-10-29 18:57 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments

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Description Jakub Caban 2011-08-03 12:53:18 UTC
After upgrade to mysql (to 5.5.15) and rebuilding akonadi there is problem on start:

110803 12:38:51 [Note] Plugin 'FEDERATED' is disabled.
110803 12:38:51 InnoDB: The InnoDB memory heap is disabled
110803 12:38:51 InnoDB: Mutexes and rw_locks use GCC atomic builtins
110803 12:38:51 InnoDB: Compressed tables use zlib 1.2.5
110803 12:38:51 InnoDB: Initializing buffer pool, size = 80.0M
110803 12:38:51 InnoDB: Completed initialization of buffer pool
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
110803 12:38:51  InnoDB: Retrying to lock the first data file
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.

Reproducible: Always

Steps to Reproduce:
1. Upgrade mysql to 5.5.15
2. Rebuild akonad-server
3. Try to start akonadi
Actual Results:  
Fail

Expected Results:  
Start and functional Akonadi

Package Manager Information:
    Package Name              paludis
    Package Version           0.64.2
    Build Date                2011-07-17T20:46:39+0200
    Built with CXX            x86_64-pc-linux-gnu-g++ 4.5.2
    Built with CXXFLAGS        -march=k8 -msse3 -O2 -pipe -fomit-frame-pointer -pedantic
    Built with LDFLAGS        -Wl,-O1 -Wl,--as-needed -Wl,-O2

Environment Information:
    Format                    paludis
    Config dir                /etc/paludis
    Root                      /
    System Root               /
    World file                /var/db/pkg/world

Repository gentoo:
    format                    e
    location                  /usr/portage
    builddir                  /var/tmp/paludis
    cache                     /usr/portage/metadata/cache
    distdir                   /home/distfiles
    eapi_when_unknown         0
    eapi_when_unspecified     0
    eclassdirs                /usr/portage/eclass
    layout                    traditional
    names_cache               /usr/portage/.cache/names
    newsdir                   /usr/portage/metadata/news
    profile_eapi_when_unspecified 0
    profile_layout            traditional
    profiles                  /usr/portage/profiles/default/linux/amd64/10.0/desktop/kde
    securitydir               /usr/portage/metadata/glsa
    setsdir                   /usr/portage/sets
    sync                      rsync://rsync.gentoo.org/gentoo-portage
    sync_options              
    use_manifest              use
    write_cache               /var/cache/paludis/metadata
    Package information
        app-shells/bash       4.2_p10
        dev-java/java-config  2.1.11-r3
        dev-lang/python       2.7.2-r2 3.2-r2
        dev-util/ccache       3.1.5
        dev-util/cmake        2.8.5-r2
        dev-util/pkgconfig    0.26
        sys-apps/baselayout   2.0.3
        sys-apps/openrc       0.8.3-r1
        sys-apps/sandbox      2.5
        sys-devel/autoconf    2.13 2.68
        sys-devel/automake    1.10.3 1.11.1-r1 1.9.6-r3
        sys-devel/binutils    2.21.1
        sys-devel/gcc         4.5.2
        sys-devel/gcc-config  1.4.1-r1
        sys-devel/libtool     2.4-r1
        sys-devel/make        3.82-r1
        sys-freebsd/freebsd-lib (none)
        sys-kernel/linux-headers 2.6.38
        sys-libs/glibc        2.13-r4
        sys-libs/uclibc       (none)

Extra Information for app-office/akonadi-server-1.6.0::installed:
        >>> Running ebuild phase killold as paludisbuild:paludisbuild...
        >>> Starting builtin_killold
        >>> Done builtin_killold
        >>> Completed ebuild phase killold
        >>> Running ebuild phases initmisc infovars info as paludisbuild:paludisbuild...
        >>> Starting builtin_initmisc
        bunzip2 < /var/db/pkg/app-office/akonadi-server-1.6.0/environment.bz2 > /var/tmp/paludis/environment-app-office-akonadi-server-1.6.0-22169
        ebuild_scrub_environment /var/tmp/paludis/environment-app-office-akonadi-server-1.6.0-22169
        ebuild_safe_source /var/tmp/paludis/environment-app-office-akonadi-server-1.6.0-22169
        rm /var/tmp/paludis/environment-app-office-akonadi-server-1.6.0-22169
        >>> Done builtin_initmisc
        >>> Starting builtin_infovars
        ACCEPT_KEYWORDS=amd64
        CBUILD=x86_64-pc-linux-gnu
        CFLAGS=-march=native -msse3 -O2 -pipe -fomit-frame-pointer
        CHOST=x86_64-pc-linux-gnu
        CONFIG_PROTECT=/etc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0 
        CONFIG_PROTECT_MASK=/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c 
        CPPFLAGS= -DNDEBUG
        CTARGET=
        CXXFLAGS=-march=native -msse3 -O2 -pipe -fomit-frame-pointer
        DISTDIR=/var/db/pkg/app-office/akonadi-server-1.6.0
        FEATURES=
        FFLAGS=
        GENTOO_MIRRORS=
        INSTALL_MASK=
        LANG=
        LC_ALL=C
        LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,-O2
        LINGUAS=en
        MAKEOPTS=-j5
        PORTAGE_COMPRESS=
        PORTAGE_COMPRESS_FLAGS=
        PORTAGE_CONFIGROOT=
        PORTAGE_RSYNC_EXTRA_OPTS=
        PORTAGE_RSYNC_OPTS=
        PORTAGE_TMPDIR=/var/tmp/paludis
        PORTDIR=/var/db/pkg/app-office/akonadi-server-1.6.0
        PORTDIR_OVERLAY=
        SYNC=
        USE=mysql sqlite amd64 alsa_cards_ali5451 alsa_cards_als4000 alsa_cards_atiixp alsa_cards_atiixp-modem alsa_cards_bt87x alsa_cards_ca0106 alsa_cards_cmipci alsa_cards_emu10k1x alsa_cards_ens1370 alsa_cards_ens1371 alsa_cards_es1938 alsa_cards_es1968 alsa_cards_fm801 alsa_cards_hda-intel alsa_cards_intel8x0 alsa_cards_intel8x0m alsa_cards_maestro3 alsa_cards_trident alsa_cards_usb-audio alsa_cards_via82xx alsa_cards_via82xx-modem alsa_cards_ymfpci alsa_pcm_plugins_adpcm alsa_pcm_plugins_alaw alsa_pcm_plugins_asym alsa_pcm_plugins_copy alsa_pcm_plugins_dmix alsa_pcm_plugins_dshare alsa_pcm_plugins_dsnoop alsa_pcm_plugins_empty alsa_pcm_plugins_extplug alsa_pcm_plugins_file alsa_pcm_plugins_hooks alsa_pcm_plugins_iec958 alsa_pcm_plugins_ioplug alsa_pcm_plugins_ladspa alsa_pcm_plugins_lfloat alsa_pcm_plugins_linear alsa_pcm_plugins_meter alsa_pcm_plugins_mmap_emul alsa_pcm_plugins_mulaw alsa_pcm_plugins_multi alsa_pcm_plugins_null alsa_pcm_plugins_plug alsa_pcm_plugins_rate alsa_pcm_plugins_route alsa_pcm_plugins_share alsa_pcm_plugins_shm alsa_pcm_plugins_softvol apache2_modules_actions apache2_modules_alias apache2_modules_auth_basic apache2_modules_authn_alias apache2_modules_authn_anon apache2_modules_authn_dbm apache2_modules_authn_default apache2_modules_authn_file apache2_modules_authz_dbm apache2_modules_authz_default apache2_modules_authz_groupfile apache2_modules_authz_host apache2_modules_authz_owner apache2_modules_authz_user apache2_modules_autoindex apache2_modules_cache apache2_modules_cgi apache2_modules_cgid apache2_modules_dav apache2_modules_dav_fs apache2_modules_dav_lock apache2_modules_deflate apache2_modules_dir apache2_modules_disk_cache apache2_modules_env apache2_modules_expires apache2_modules_ext_filter apache2_modules_file_cache apache2_modules_filter apache2_modules_headers apache2_modules_include apache2_modules_info apache2_modules_log_config apache2_modules_logio apache2_modules_mem_cache apache2_modules_mime apache2_modules_mime_magic apache2_modules_negotiation apache2_modules_rewrite apache2_modules_setenvif apache2_modules_speling apache2_modules_status apache2_modules_unique_id apache2_modules_userdir apache2_modules_usertrack apache2_modules_vhost_alias calligra_features_braindump calligra_features_flow calligra_features_karbon calligra_features_kexi calligra_features_kpresenter calligra_features_krita calligra_features_tables calligra_features_words cameras_ptp2 collectd_plugins_df collectd_plugins_interface collectd_plugins_irq collectd_plugins_load collectd_plugins_memory collectd_plugins_rrdtool collectd_plugins_swap collectd_plugins_syslog elibc_glibc gpsd_protocols_aivdm gpsd_protocols_ashtech gpsd_protocols_earthmate gpsd_protocols_evermore gpsd_protocols_fv18 gpsd_protocols_garmin gpsd_protocols_garmintxt gpsd_protocols_gpsclock gpsd_protocols_itrax gpsd_protocols_mtk3301 gpsd_protocols_navcom gpsd_protocols_nmea gpsd_protocols_ntrip gpsd_protocols_oceanserver gpsd_protocols_oldstyle gpsd_protocols_oncore gpsd_protocols_rtcm104v2 gpsd_protocols_rtcm104v3 gpsd_protocols_sirf gpsd_protocols_superstar2 gpsd_protocols_timing gpsd_protocols_tnt gpsd_protocols_tripmate gpsd_protocols_tsip gpsd_protocols_ubx input_devices_evdev input_devices_keyboard input_devices_mouse input_devices_synaptics kernel_linux lcd_devices_bayrad lcd_devices_cfontz lcd_devices_cfontz633 lcd_devices_glk lcd_devices_hd44780 lcd_devices_lb216 lcd_devices_lcdm001 lcd_devices_mtxorb lcd_devices_ncurses lcd_devices_text linguas_en php_targets_php5-3 ruby_targets_ruby18 userland_GNU video_cards_r600 video_cards_radeon xtables_addons_account xtables_addons_chaos xtables_addons_condition xtables_addons_delude xtables_addons_dhcpmac xtables_addons_fuzzy xtables_addons_geoip xtables_addons_iface xtables_addons_ipmark xtables_addons_ipp2p xtables_addons_ipset xtables_addons_ipv4options xtables_addons_length2 xtables_addons_logmark xtables_addons_lscan xtables_addons_pknock xtables_addons_psd xtables_addons_quota2 xtables_addons_rawnat xtables_addons_steal xtables_addons_sysrq xtables_addons_tarpit xtables_addons_tee amd64 
        >>> Done builtin_infovars
        >>> Starting pkg_info
        >>> Done pkg_info
        >>> Completed ebuild phases initmisc infovars info
        >>> Running ebuild phase tidyup as paludisbuild:paludisbuild...
        >>> Starting builtin_tidyup
        rm -fr /var/tmp/paludis/app-office-akonadi-server-1.6.0-info
        >>> Done builtin_tidyup
        >>> Completed ebuild phase tidyup
Comment 1 Andreas K. Hüttel archtester gentoo-dev 2011-08-29 21:37:53 UTC
Hmm seems like you're using a pmasked version of mysql
Comment 2 Jakub Caban 2011-08-29 22:27:03 UTC
Indeed - it's related to https://bugs.gentoo.org/show_bug.cgi?id=338818
Comment 3 Johannes Huber (RETIRED) gentoo-dev 2011-10-09 10:02:03 UTC
Do you test it with app-office/akonadi-server-1.6.2?
Comment 4 Jakub Caban 2011-10-09 10:41:58 UTC
I just tried, but unfortunately install of mysql-5.5.16 failed:

-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_alter1_1_2_myisam.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_mgm_lc0_archive.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_mgm_lc0_myisam.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_alter3_myisam.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_mgm_lc2_myisam.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_auto_increment_memory.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_basic_myisam.result
-- Installing: /var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_alter1_1_2_innodb.result
CMake Error at mysql-test/cmake_install.cmake:36 (FILE):
  file INSTALL cannot copy file
  "/var/tmp/paludis/dev-db-mysql-5.5.16/work/mysql/mysql-test/./suite/parts/r/partition_alter1_1_2_innodb.result"
  to
  "/var/tmp/paludis/dev-db-mysql-5.5.16/image/usr/share/mysql/mysql-test/./suite/parts/r/partition_alter1_1_2_innodb.result".
Call Stack (most recent call first):
  cmake_install.cmake:100 (INCLUDE)


make: *** [install] Error 1
/usr/libexec/paludis/utils/emake: emake returned error 2
Comment 5 Jakub Caban 2011-10-09 10:49:49 UTC
Ouh - just tmpfs ran out of space. Trying again - will report soon.
Comment 6 Jakub Caban 2011-10-09 11:11:51 UTC
Nope - exactly same problem:

111009 13:09:39 [Note] Plugin 'FEDERATED' is disabled.
111009 13:09:39 InnoDB: The InnoDB memory heap is disabled
111009 13:09:39 InnoDB: Mutexes and rw_locks use GCC atomic builtins
111009 13:09:39 InnoDB: Compressed tables use zlib 1.2.5.1
111009 13:09:39 InnoDB: Initializing buffer pool, size = 80.0M
111009 13:09:39 InnoDB: Completed initialization of buffer pool
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
111009 13:09:39  InnoDB: Retrying to lock the first data file
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.
InnoDB: Unable to lock ./ibdata1, error: 11
InnoDB: Check that you do not already have another mysqld process
InnoDB: using the same InnoDB data or log files.

akonadiserver.error:

"[
0: akonadiserver(_Z11akBacktracev+0x34) [0x44c1f4]
1: akonadiserver() [0x44c577]
2: /lib64/libc.so.6() [0x30ae4344d0]
3: /lib64/libc.so.6(gsignal+0x35) [0x30ae434455]
4: /lib64/libc.so.6(abort+0x17a) [0x30ae4357ba]
5: /usr/lib64/qt4/libQtCore.so.4(_Z17qt_message_output9QtMsgTypePKc+0x6c) [0x37fb67097c]
6: /usr/lib64/qt4/libQtCore.so.4() [0x37fb670aff]
7: /usr/lib64/qt4/libQtCore.so.4(_Z6qFatalPKcz+0x94) [0x37fb670c94]
8: akonadiserver(_ZN13DbConfigMysql19startInternalServerEv+0x11f1) [0x4ceb71]
9: akonadiserver(_ZN7Akonadi13AkonadiServer20startDatabaseProcessEv+0xd2) [0x44e032]
10: akonadiserver(_ZN7Akonadi13AkonadiServerC1EP7QObject+0xbc) [0x44f7ac]
11: akonadiserver(_ZN7Akonadi13AkonadiServer8instanceEv+0x37) [0x450dd7]
12: akonadiserver(main+0x1a7) [0x4475e7]
13: /lib64/libc.so.6(__libc_start_main+0xed) [0x30ae420fad]
14: akonadiserver() [0x447d51]
]
"
Comment 7 Jakub Caban 2011-10-09 11:12:33 UTC
End of mysql error file:

111009 13:11:19  InnoDB: Operating system error number 11 in a file operation.
InnoDB: Error number 11 means 'Resource temporarily unavailable'.
InnoDB: Some operating system error numbers are described at
InnoDB: http://dev.mysql.com/doc/refman/5.5/en/operating-system-error-codes.html
111009 13:11:19 InnoDB: Could not open or create data files.
111009 13:11:19 InnoDB: If you tried to add new data files, and it failed here,
111009 13:11:19 InnoDB: you should now edit innodb_data_file_path in my.cnf back
111009 13:11:19 InnoDB: to what it was, and remove the new ibdata files InnoDB created
111009 13:11:19 InnoDB: in this failed attempt. InnoDB only wrote those files full of
111009 13:11:19 InnoDB: zeros, but did not yet use them in any way. But be careful: do not
111009 13:11:19 InnoDB: remove old data files which contain your precious data!
111009 13:11:19 [ERROR] Plugin 'InnoDB' init function returned error.
111009 13:11:19 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
111009 13:11:19 [ERROR] Unknown/unsupported storage engine: innodb
111009 13:11:19 [ERROR] Aborting

111009 13:11:19 [Note] /usr/sbin/mysqld: Shutdown complete
Comment 8 Jakub Caban 2011-10-09 11:41:27 UTC
Problem SOLVED :)

I had to recompile qt-sql, than akonadi-server, than reboot (without reboot simply didn't work?) and than akonadi-server works :)

I think there should be some guide for people trying to achieve the same.
Comment 9 Andreas K. Hüttel archtester gentoo-dev 2011-10-29 18:57:41 UTC
(In reply to comment #8)
> Problem SOLVED :)
> 
> I had to recompile qt-sql, than akonadi-server, than reboot (without reboot
> simply didn't work?) and than akonadi-server works :)
> 
> I think there should be some guide for people trying to achieve the same.

we now have an excellent wiki :) 
wiki.gentoo.org
thanks for reporting!