After an install the install fails... AFTER merge. The next merge find all files installed but without package & complains & merges... Another install (of dnsmasq see results) just works...... Reproducible: Always Steps to Reproduce: 1. In this case emerge libvirt failed on install of new components 2. so emerge -va libvirt Actual Results: See below... Expected Results: flawless install in stead of double compiles? emerge --info Portage 2.1.10.3 (default/linux/x86/10.0, gcc-4.4.5, glibc-2.12.2-r0, 2.6.35-vs2.3.0.36.32-gentoo i686) ================================================================= System uname: Linux-2.6.35-vs2.3.0.36.32-gentoo-i686-AMD_Phenom-tm-_II_X4_810_Processor-with-gentoo-2.0.2 Timestamp of tree: Tue, 05 Jul 2011 17:00:01 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] ccache version 2.4 [disabled] app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1, 3.1.3-r1 dev-util/ccache: 2.4-r9 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.25-r2 sys-apps/baselayout: 2.0.2 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.68 sys-devel/automake: 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.82 sys-kernel/linux-headers: 2.6.36.1 (virtual/os-headers) sys-libs/glibc: 2.12.2 Repositories: gentoo voip kolab scarabeus_local_overlay sunrise x-portage ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/openfire/resources/security/ /usr/lib/fax /usr/share/gnupg/qualified.txt /var/spool/fax/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs" DISTDIR="/data/distdir" FEATURES="assume-digests binpkg-logs distlocks ebuild-locks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox" FFLAGS="" GENTOO_MIRRORS="http://mirror.bytemark.co.uk/gentoo/ rsync://212.219.56.133/www.ibiblio.org/gentoo/ http://gd.tuwien.ac.at/opsys/linux/gentoo/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en_GB en_US nl en" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_EXTRA_OPTS="--exclude ChangeLog --delete-excluded" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/voip /var/lib/layman/kolab /var/lib/layman/scarabeus /var/lib/layman/sunrise /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="3dnow 3dnowext aac aalib acl acpi ads aio alsa amr apache2 apm audit avahi bash-completion berkdb bluetooth bookmarks bzip2 caps cli consolekit cracklib crypt cups curl cxx dbus dga directfb djvu dri encode esd exif expat fam fax fbcon ffmpeg flac fltk foomaticdb fortran gamin gd gdbm ggi gif gmp gpm graphviz gstreamer iconv idn ipv6 ithreads jack java jbig jpeg jpeg2k kerberos kolab lcms ldap ldb libcaca libsamplerate lm_sensors lzma mad mikmod mmap mmx mmxext mng modules mp3 mudflap mysql ncurses network nforce2 nls nptl nptlonly nvidia odbc ogg openexr openldap openmp pam pcre pdf perl php plotutils png policykit ppds pppd python radius readline samba sasl sdl session skey slang sndfile snmp speex spell sqlite sse sse2 sse4a ssl subversion sysfs syslog tcpd theora tiff truetype unicode usb vde vim-syntax vorbis x86 xattr xfs xml xorg zeroconf zip zlib" ALSA_CARDS="usb-audio hda-intel cs4232 intel8x0 wavefront" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" FOO2ZJS_DEVICES="hp2600n" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en_GB en_US nl en" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="arm i386 m68k x86_64" QEMU_USER_TARGETS="none" RUBY_TARGETS="ruby18" SANE_BACKENDS="net v4l hpaio" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS
>>> Emerging (2 of 6) net-dns/dnsmasq-2.57 * dnsmasq-2.57.tar.lzma RMD160 SHA1 SHA256 size ;-) ... [ ok ] * Package: net-dns/dnsmasq-2.57 * Repository: gentoo * Maintainer: chutzpah@gentoo.org * USE: dbus dhcp elibc_glibc idn ipv6 kernel_linux nls userland_GNU x86 * FEATURES: sandbox userpriv usersandbox >>> Unpacking source... >>> Unpacking dnsmasq-2.57.tar.lzma to /var/tmp/portage/net-dns/dnsmasq-2.57/work >>> Source unpacked in /var/tmp/portage/net-dns/dnsmasq-2.57/work >>> Preparing source in /var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57 ... * Applying dnsmasq-2.47-fbsd-config.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57 ... make -j9 PREFIX=/usr CC=i686-pc-linux-gnu-gcc 'CFLAGS=-march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs' 'COPTS= -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN' all-i18n make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c cache.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c rfc1035.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c util.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c option.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c forward.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c network.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c dnsmasq.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c dhcp.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c lease.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c rfc2131.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c netlink.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c dbus.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c bpf.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c helper.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c tftp.c i686-pc-linux-gnu-gcc -march=amdfam10 -O2 -pipe -mno-tls-direct-seg-refs -DNO_TFTP -DHAVE_DBUS -DHAVE_IDN -DLOCALEDIR=\"/usr/share/locale\" -I/usr/include/dbus-1.0 -I/usr/lib/dbus-1.0/include -c log.c i686-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -o dnsmasq cache.o rfc1035.o util.o option.o forward.o network.o dnsmasq.o dhcp.o lease.o rfc2131.o netlink.o dbus.o bpf.o helper.o tftp.o log.o -ldbus-1 -lpthread -lrt -lidn make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' xgettext -d dnsmasq --foreign-user --omit-header --keyword=_ -o dnsmasq.pot -i cache.c rfc1035.c util.c option.c forward.c network.c dnsmasq.c dhcp.c lease.c rfc2131.c netlink.c dbus.c bpf.c helper.c tftp.c log.c msgmerge -o - ../po/de.po dnsmasq.pot | msgfmt -o de.mo - .......................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/es.po dnsmasq.pot | msgfmt -o es.mo - .......................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/fi.po dnsmasq.pot | msgfmt -o fi.mo - ...................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/fr.po dnsmasq.pot | msgfmt -o fr.mo - ...................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/id.po dnsmasq.pot | msgfmt -o id.mo - ................................................ done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/it.po dnsmasq.pot | msgfmt -o it.mo - ............................................................. done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/no.po dnsmasq.pot | msgfmt -o no.mo - .................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/pl.po dnsmasq.pot | msgfmt -o pl.mo - .......................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/pt_BR.po dnsmasq.pot | msgfmt -o pt_BR.mo - ......................................................... done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' msgmerge -o - ../po/ro.po dnsmasq.pot | msgfmt -o ro.mo - ........................................................ done. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' >>> Source compiled. >>> Test phase [not enabled]: net-dns/dnsmasq-2.57 >>> Install dnsmasq-2.57 into /var/tmp/portage/net-dns/dnsmasq-2.57/image/ category net-dns make -j9 PREFIX=/usr MANDIR=/usr/share/man DESTDIR=/var/tmp/portage/net-dns/dnsmasq-2.57/image/ install-i18n install -d /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/sbin -d /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/man/man8 install -m 644 man/dnsmasq.8 /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/man/man8 install -m 755 src/dnsmasq /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/sbin make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `dnsmasq' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `de.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `es.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `fi.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `fr.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `id.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `it.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `no.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `pl.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `pt_BR.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: Entering directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' make[1]: `ro.mo' is up to date. make[1]: Leaving directory `/var/tmp/portage/net-dns/dnsmasq-2.57/work/dnsmasq-2.57/src' cd src; ../bld/install-mo /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale install installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/de/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/es/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/fi/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/fr/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/id/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/it/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/no/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/pl/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/pt_BR/LC_MESSAGES/dnsmasq.mo installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/locale/ro/LC_MESSAGES/dnsmasq.mo cd man; ../bld/install-man /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/man install installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/man/es/man8/dnsmasq.8 installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/man/fr/man8/dnsmasq.8 >>> Completed installing dnsmasq-2.57 into /var/tmp/portage/net-dns/dnsmasq-2.57/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/sbin/dnsmasq ecompressdir: bzip2 -9 /usr/share/man >>> Installing (2 of 6) net-dns/dnsmasq-2.57 * checking 22 files for package collisions >>> Merging net-dns/dnsmasq-2.57 to / --- /usr/ --- /usr/sbin/ >>> /usr/sbin/dnsmasq --- /usr/share/ --- /usr/share/man/ --- /usr/share/man/man8/ >>> /usr/share/man/man8/dnsmasq.8.bz2 --- /usr/share/man/es/ >>> /usr/share/man/es/man8/ >>> /usr/share/man/es/man8/dnsmasq.8.bz2 --- /usr/share/man/fr/ --- /usr/share/man/fr/man8/ >>> /usr/share/man/fr/man8/dnsmasq.8.bz2 --- /usr/share/locale/ --- /usr/share/locale/de/ --- /usr/share/locale/de/LC_MESSAGES/ >>> /usr/share/locale/de/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/es/ --- /usr/share/locale/es/LC_MESSAGES/ >>> /usr/share/locale/es/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/fi/ --- /usr/share/locale/fi/LC_MESSAGES/ >>> /usr/share/locale/fi/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/fr/ --- /usr/share/locale/fr/LC_MESSAGES/ >>> /usr/share/locale/fr/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/id/ --- /usr/share/locale/id/LC_MESSAGES/ >>> /usr/share/locale/id/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/it/ --- /usr/share/locale/it/LC_MESSAGES/ >>> /usr/share/locale/it/LC_MESSAGES/dnsmasq.mo >>> /usr/share/locale/no/ >>> /usr/share/locale/no/LC_MESSAGES/ >>> /usr/share/locale/no/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/pl/ --- /usr/share/locale/pl/LC_MESSAGES/ >>> /usr/share/locale/pl/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/pt_BR/ --- /usr/share/locale/pt_BR/LC_MESSAGES/ >>> /usr/share/locale/pt_BR/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/ro/ --- /usr/share/locale/ro/LC_MESSAGES/ >>> /usr/share/locale/ro/LC_MESSAGES/dnsmasq.mo --- /usr/share/doc/ >>> /usr/share/doc/dnsmasq-2.57/ >>> /usr/share/doc/dnsmasq-2.57/FAQ.bz2 >>> /usr/share/doc/dnsmasq-2.57/html/ >>> /usr/share/doc/dnsmasq-2.57/html/doc.html >>> /usr/share/doc/dnsmasq-2.57/html/setup.html >>> /usr/share/doc/dnsmasq-2.57/CHANGELOG.bz2 --- /etc/ --- /etc/init.d/ >>> /etc/init.d/dnsmasq --- /etc/conf.d/ >>> /etc/conf.d/dnsmasq >>> /etc/dnsmasq.conf --- /etc/dbus-1/ --- /etc/dbus-1/system.d/ >>> /etc/dbus-1/system.d/dnsmasq.conf Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor >>> Failed to install net-dns/dnsmasq-2.57, Log file: >>> '/var/log/portage/net-dns:dnsmasq-2.57:20110706-150650.log'
Some input has been clipped as ther is no error in the build itself... /man8/dnsmasq.8 installing /var/tmp/portage/net-dns/dnsmasq-2.57/image//usr/share/man/fr/man8/dnsmasq.8 >>> Completed installing dnsmasq-2.57 into /var/tmp/portage/net-dns/dnsmasq-2.57/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/sbin/dnsmasq ecompressdir: bzip2 -9 /usr/share/man >>> Installing (1 of 5) net-dns/dnsmasq-2.57 * checking 22 files for package collisions * This package will overwrite one or more files that may belong to other * packages (see list below). You can use a command such as `portageq * owners / <filename>` to identify the installed package that owns a * file. If portageq reports that only one package owns a file then do * NOT file a bug report. A bug report is only useful if it identifies at * least two or more packages that are known to install the same file(s). * If a collision occurs and you can not explain where the file came from * then you should simply ignore the collision since there is not enough * information to determine if a real problem exists. Please do NOT file * a bug report at http://bugs.gentoo.org unless you report exactly which * two packages install the same file(s). Once again, please do NOT file * a bug report unless you have completely understood the above message. * * Detected file collision(s): * * /usr/sbin/dnsmasq * /usr/share/man/man8/dnsmasq.8.bz2 * /usr/share/man/es/man8/dnsmasq.8.bz2 * /usr/share/man/fr/man8/dnsmasq.8.bz2 * /usr/share/locale/de/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/es/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/fi/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/fr/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/id/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/it/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/no/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/pl/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/pt_BR/LC_MESSAGES/dnsmasq.mo * /usr/share/locale/ro/LC_MESSAGES/dnsmasq.mo * /usr/share/doc/dnsmasq-2.57/FAQ.bz2 * /usr/share/doc/dnsmasq-2.57/CHANGELOG.bz2 * /usr/share/doc/dnsmasq-2.57/html/doc.html * /usr/share/doc/dnsmasq-2.57/html/setup.html * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * * None of the installed packages claim the file(s). * * Package 'net-dns/dnsmasq-2.57' merged despite file collisions. If * necessary, refer to your elog messages for the whole content of the * above message. >>> Merging net-dns/dnsmasq-2.57 to / --- /usr/ --- /usr/sbin/ >>> /usr/sbin/dnsmasq --- /usr/share/ --- /usr/share/man/ --- /usr/share/man/man8/ >>> /usr/share/man/man8/dnsmasq.8.bz2 --- /usr/share/man/es/ --- /usr/share/man/es/man8/ >>> /usr/share/man/es/man8/dnsmasq.8.bz2 --- /usr/share/man/fr/ --- /usr/share/man/fr/man8/ >>> /usr/share/man/fr/man8/dnsmasq.8.bz2 --- /usr/share/locale/ --- /usr/share/locale/de/ --- /usr/share/locale/de/LC_MESSAGES/ >>> /usr/share/locale/de/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/es/ --- /usr/share/locale/es/LC_MESSAGES/ >>> /usr/share/locale/es/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/fi/ --- /usr/share/locale/fi/LC_MESSAGES/ >>> /usr/share/locale/fi/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/fr/ --- /usr/share/locale/fr/LC_MESSAGES/ >>> /usr/share/locale/fr/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/id/ --- /usr/share/locale/id/LC_MESSAGES/ >>> /usr/share/locale/id/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/it/ --- /usr/share/locale/it/LC_MESSAGES/ >>> /usr/share/locale/it/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/no/ --- /usr/share/locale/no/LC_MESSAGES/ >>> /usr/share/locale/no/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/pl/ --- /usr/share/locale/pl/LC_MESSAGES/ >>> /usr/share/locale/pl/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/pt_BR/ --- /usr/share/locale/pt_BR/LC_MESSAGES/ >>> /usr/share/locale/pt_BR/LC_MESSAGES/dnsmasq.mo --- /usr/share/locale/ro/ --- /usr/share/locale/ro/LC_MESSAGES/ >>> /usr/share/locale/ro/LC_MESSAGES/dnsmasq.mo --- /usr/share/doc/ --- /usr/share/doc/dnsmasq-2.57/ >>> /usr/share/doc/dnsmasq-2.57/FAQ.bz2 --- /usr/share/doc/dnsmasq-2.57/html/ >>> /usr/share/doc/dnsmasq-2.57/html/doc.html >>> /usr/share/doc/dnsmasq-2.57/html/setup.html >>> /usr/share/doc/dnsmasq-2.57/CHANGELOG.bz2 --- /etc/ --- /etc/init.d/ >>> /etc/init.d/dnsmasq --- /etc/conf.d/ >>> /etc/conf.d/dnsmasq >>> /etc/dnsmasq.conf --- /etc/dbus-1/ --- /etc/dbus-1/system.d/ >>> /etc/dbus-1/system.d/dnsmasq.conf >>> net-dns/dnsmasq-2.57 merged. >>> Regenerating /etc/ld.so.cache...
(In reply to comment #1) > --- /etc/dbus-1/ > --- /etc/dbus-1/system.d/ > >>> /etc/dbus-1/system.d/dnsmasq.conf > Traceback (most recent call last): > File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in > _spawn > prev_mtimes=self.prev_mtimes, counter=counter) > File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge > counter=counter) > File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk > self.vartree.dbapi._fs_unlock() > File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock > unlockfile(self._fs_lock_obj) > File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile > locking_method(myfd,fcntl.LOCK_UN) > IOError: [Errno 9] Bad file descriptor This IOError is interesting. Are you able to reproduce that?
At least with libpciaccess-0.12.1 & dnsmasq-2.57 netcat6-1.0-r2, libssh2-1.2.2 did install immediately as did libvirt itself. So yes and no.
Also libnl-1.1-r2 did fail before ebtables-2.0.9.2, yaj1-1.0.11 did succeed
after unmerge libnl, libpciaccess, dnsmasq and running emerge -1 libvirt libnl (1) builds fine dnsmasq (2) fails with the same. So it looks like the second build sometimes fails... emerge -1 libvirt again dnsmasq (1) builds, libpciaccess (2) builds libvirt (3) builds So multiple builds seem to be involved. Maybe the firstbuild forgot to unlock?
(In reply to comment #6) > after unmerge libnl, libpciaccess, dnsmasq > and running emerge -1 libvirt > > libnl (1) builds fine > dnsmasq (2) fails with the same. > > So it looks like the second build sometimes fails... When it fails, does it always fail with an identical error to the one quoted in comment #3? > emerge -1 libvirt again > dnsmasq (1) builds, > libpciaccess (2) builds > libvirt (3) builds > > So multiple builds seem to be involved. > Maybe the firstbuild forgot to unlock? All of the fs_unlock() calls are in finally blocks following fs_lock() calls, so it's not possible to forget. Also, there are assertions inside fs_unlock() and fs_unlock() that will raise AssertionError before the code that raises IOError, so it's interesting that it passed the assertions. It's also very interesting that nobody else has reported this issue during the couple of months since this code has been released. Have you experienced this problem on more than one machine, or just one?
I tried some more installs. The failure is allways identical. It's allways in the 2nd job if it fails. And quite to my surprise currently only on this system (it is a server..) Another fairly identical system (processor/motherboard) desktop system does work correctly, a selinux based system does funtion correctly Also a laptop running amd64 code works correctly. Any idea where to look next on this system, as the problem seems to be confined to this system.
Try installing sys-apps/portage again, and if nothing changes then please attach `emerge --info --verbose` output.
Please standby... BTW, there is another issue, just tried emerge --depclean -p and it suggests to remove : !!! 'app-editors/nano' (virtual/editor) is part of your system profile. !!! Unmerging it may be damaging to your system. app-editors/nano selected: 2.2.5 protected: none omitted: none And that seems queer to me, this IS on all systems involved...
Portage 2.1.10.3 (default/linux/x86/10.0, gcc-4.4.5, glibc-2.12.2-r0, 2.6.35-vs2.3.0.36.32-gentoo i686) ================================================================= System uname: Linux-2.6.35-vs2.3.0.36.32-gentoo-i686-AMD_Phenom-tm-_II_X4_810_Processor-with-gentoo-2.0.2 Timestamp of tree: Thu, 07 Jul 2011 20:30:01 +0000 distcc 3.1 i686-pc-linux-gnu [disabled] ccache version 2.4 [disabled] app-shells/bash: 4.1_p9 dev-java/java-config: 2.1.11-r3 dev-lang/python: 2.7.1-r1, 3.1.3-r1 dev-util/ccache: 2.4-r9 dev-util/cmake: 2.8.4-r1 dev-util/pkgconfig: 0.25-r2 sys-apps/baselayout: 2.0.2 sys-apps/openrc: 0.8.3-r1 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.68 sys-devel/automake: 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.4.5 sys-devel/gcc-config: 1.4.1-r1 sys-devel/libtool: 2.2.10 sys-devel/make: 3.82 sys-kernel/linux-headers: 2.6.36.1 (virtual/os-headers) sys-libs/glibc: 2.12.2 Repositories: gentoo location: /usr/portage sync: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 voip location: /var/lib/layman/voip masters: gentoo priority: 0 kolab location: /var/lib/layman/kolab masters: gentoo priority: 1 scarabeus_local_overlay location: /var/lib/layman/scarabeus masters: gentoo priority: 2 sunrise location: /var/lib/layman/sunrise masters: gentoo priority: 3 x-portage location: /usr/local/portage masters: gentoo priority: 4 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1" ACCEPT_PROPERTIES="*" ALSA_CARDS="usb-audio hda-intel cs4232 intel8x0 wavefront" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" AMANDA_CONFIG_NAME="DailySet1" AMANDA_DBGDIR="/var/spool/amanda/tmp" AMANDA_DBMODE="db" AMANDA_GROUP_GID="87" AMANDA_GROUP_NAME="amanda" AMANDA_MAX_TAPE_BLOCK_KB="512" AMANDA_PORTS="" AMANDA_PORTS_BOTH="" AMANDA_PORTS_TCP="" AMANDA_PORTS_UDP="" AMANDA_SERVER="irma" AMANDA_SERVER_INDEX="irma" AMANDA_SERVER_TAPE="irma" AMANDA_TAR="/bin/tar" AMANDA_TAR_LISTDIR="/var/spool/amanda/tar-lists" AMANDA_TMPDIR="/var/spool/amanda/tmp" AMANDA_USER_GROUPS="amanda" AMANDA_USER_HOMEDIR="/var/spool/amanda" AMANDA_USER_NAME="amanda" AMANDA_USER_SH="/bin/false" AMANDA_USER_UID="87" ANT_HOME="/usr/share/ant" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ARCH="x86" AUTOCLEAN="yes" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=amdfam10 -O2 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garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" GUILE_LOAD_PATH="/usr/share/guile/1.8" HOME="/root" INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.20.1/info:/usr/share/gcc-data/i686-pc-linux-gnu/4.4.5/info" INPUT_DEVICES="keyboard mouse evdev" JAVAC="/etc/java-config-2/current-system-vm/bin/javac" JAVA_HOME="/etc/java-config-2/current-system-vm" JDK_HOME="/etc/java-config-2/current-system-vm" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LESS="-R -M --shift 5" LESSOPEN="|lesspipe.sh %s" LINGUAS="en_GB en_US nl en" LOGNAME="root" LS_COLORS="rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:" MAIL="/var/mail/root" MAKEOPTS="-j9" MANPAGER="less" MANPATH="/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.20.1/man:/usr/share/gcc-data/i686-pc-linux-gnu/4.4.5/man:/etc/java-config/system-vm/man/:/usr/lib/php5.3/man/:/usr/share/postgresql/man/:/usr/share/postgresql-9.0/man/" NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" NOCOLOR="true" OLDPWD="/root" OPENGL_PROFILE="xorg-x11" PAGER="less" PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.4.5" PHP_TARGETS="php5-3" PKGDIR="/usr/portage/packages" PORTAGE_ARCHLIST="ppc sparc64-freebsd ppc-openbsd x86-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd x86-cygwin amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib/portage/bin" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ELOG_CLASSES="warn error log info" PORTAGE_ELOG_JABBERTO="nico@baggus.net admin@baggus.net" PORTAGE_ELOG_MAILFROM="portage@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SUBJECT=" on '" PORTAGE_ELOG_SYSTEM="save jabber" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="250" PORTAGE_GPG_SIGNING_COMMAND="gpg --sign --clearsign --yes --default-key "${PORTAGE_GPG_KEY}" --homedir "${PORTAGE_GPG_DIR}" "${FILE}"" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib/portage/pym" PORTAGE_RSYNC_EXTRA_OPTS="--exclude ChangeLog --delete-excluded" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="-1" PORTAGE_SANDBOX_COMPAT_LEVEL="16" PORTAGE_SYNC_STALE="30" PORTAGE_TMPDIR="/var/tmp" PORTAGE_TMPFS="/dev/shm" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/voip /var/lib/layman/kolab /var/lib/layman/scarabeus /var/lib/layman/sunrise /usr/local/portage" PORT_LOGDIR="/var/log/portage" PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" PWD="/var/lib" PYTHONDONTWRITEBYTECODE="1" QEMU_SOFTMMU_TARGETS="arm i386 m68k x86_64" QEMU_USER_TARGETS="none" RESUMECOMMAND="/usr/bin/wget -c -t 3 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" RESUMECOMMAND_RSYNC="rsync -avP "${URI}" "${DISTDIR}/${FILE}"" RESUMECOMMAND_SSH="bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}"" ROOT="/" ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/4.4.5" RPMDIR="/usr/portage/rpm" RUBY_TARGETS="ruby18" SANE_BACKENDS="net v4l hpaio" SANE_CONFIG_DIR="/etc/sane.d" SHELL="/bin/bash" SHLVL="1" SSH_AGENT_PID="5835" SSH_AUTH_SOCK="/tmp/ssh-yHzHuZVq5834/agent.5834" SSH_CLIENT="192.168.6.70 47498 22" SSH_CONNECTION="192.168.6.70 47498 192.168.6.5 22" SSH_TTY="/dev/pts/0" SYNC="rsync://rsync.gentoo.org/gentoo-portage" TERM="xterm" USB_DEVFS_PATH="/dev/bus/usb" USE="3dnow 3dnowext aac aalib acl acpi ads aio alsa amr apache2 apm audit avahi bash-completion berkdb bluetooth bookmarks bzip2 caps cli consolekit cracklib crypt cups curl cxx dbus dga directfb djvu dri encode esd exif expat fam fax fbcon ffmpeg flac fltk foomaticdb fortran gamin gd gdbm ggi gif gmp gpm graphviz gstreamer iconv idn ipv6 ithreads jack java jbig jpeg jpeg2k kerberos kolab lcms ldap ldb libcaca libsamplerate lm_sensors lzma mad mikmod mmap mmx mmxext mng modules mp3 mudflap mysql ncurses network nforce2 nls nptl nptlonly nvidia odbc ogg openexr openldap openmp pam pcre pdf perl php plotutils png policykit ppds pppd python radius readline samba sasl sdl session skey slang sndfile snmp speex spell sqlite sse sse2 sse4a ssl subversion sysfs syslog tcpd theora tiff truetype unicode usb vde vim-syntax vorbis x86 xattr xfs xml xorg zeroconf zip zlib" ALSA_CARDS="usb-audio hda-intel cs4232 intel8x0 wavefront" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="braindump flow karbon kexi kpresenter krita tables words" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" FOO2ZJS_DEVICES="hp2600n" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en_GB en_US nl en" PHP_TARGETS="php5-3" QEMU_SOFTMMU_TARGETS="arm i386 m68k x86_64" QEMU_USER_TARGETS="none" RUBY_TARGETS="ruby18" SANE_BACKENDS="net v4l hpaio" USERLAND="GNU" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" USER="root" USERLAND="GNU" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CALLIGRA_FEATURES CAMERAS COLLECTD_PLUGINS CROSSCOMPILE_OPTS DRACUT_MODULES DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS GPSD_PROTOCOLS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL OFED_DRIVERS PHP_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XFCE_PLUGINS XTABLES_ADDONS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VBOX_APP_HOME="/opt/VirtualBox" VIDEO_CARDS="fbdev glint intel mach64 mga neomagic nouveau nv r128 radeon savage sis tdfx trident vesa via vmware dummy v4l" XDG_SESSION_COOKIE="899533308b14b795c1b9035700260634-1310072255.404410-1906596288" XSESSION="kde-4" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" _="/usr/bin/emerge"
(In reply to comment #10) > Please standby... > > BTW, there is another issue, just tried emerge --depclean -p > and it suggests to remove : > > !!! 'app-editors/nano' (virtual/editor) is part of your system profile. > !!! Unmerging it may be damaging to your system. > > app-editors/nano > selected: 2.2.5 > protected: none > omitted: none > > And that seems queer to me, this IS on all systems involved... This is the intended behavior. See discussion in bug #370295 and bug #370439.
Ok, i understand.. the nano issue Maybe something for eselect news?
(In reply to comment #13) > Ok, i understand.. the nano issue > > Maybe something for eselect news? I don't think it's really necessary, since people have always needed to be careful with --depclean, and the solution if people decide they want to keep a package remains the same as always (emerge --noreplace <atom>).
OK, back on topic, anything you want to be checked?
It's very puzzling. Have you tried installing sys-apps/portage again like I suggested in comment #9? If that doesn't help then maybe try a reboot.
I did, and as a respons I posted the requested emerge --info --verbose in https:#c11 (comment 11)
after reboot: - emerge --unmerge xapian gmime mu ; emerge mu yields: (xapian, gmime & mu are build in that order.) >>> Installing (2 of 3) dev-libs/gmime-2.4.22 Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor >>> Failed to install dev-libs/gmime-2.4.22, Log file: what does this file descriptor describe?.. The build completes including merge for the first app during the 2nd app build AFTER the qmerge etc. it fails to add the newfiles to the portage database. ( The next rebuild mentions all files in the image as allready present but not owned by any packet and then DO complete the install.
what filesystem is this on? does the lockfile exists for a died emerge in the filesystem? would be interesting to know what the value of myfd is, and what lsof would say about python at the moment it hits the error
(In reply to comment #18) > what does this file descriptor describe?.. It's used to hold a lock on /var/lib/portage/config. Any file would work for this purpose, and we use /var/lib/portage/config just because we can re-use it for this purpose (and it avoids the need to create another file for this purpose). The same file is also used to implement the config memory (see --noconfmem in emerge man page), and this use should not interfere with its use for locking purposes.
(In reply to comment #20) > The same file is also used to implement the config memory (see --noconfmem in > emerge man page), and this use should not interfere with its use for locking > purposes. It's worth noting that you're experiencing the "IOError: [Errno 9] Bad file descriptor" just after the merge code updates /var/lib/portage/config with new config memory data. This shouldn't cause any interference in theory, but it certainly seems to be doing so on your system.
(In reply to comment #11) > Portage 2.1.10.3 (default/linux/x86/10.0, gcc-4.4.5, glibc-2.12.2-r0, > 2.6.35-vs2.3.0.36.32-gentoo i686) Those glibc and kernel versions seems a little special. The file descriptor interference might be related to one or both of those.
I rebooted using a gentoo-kernel in stead of the vserver kernel.. (unsurprisingly: same result). >>> Installing (2 of 3) dev-libs/gmime-2.4.22 Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor >>> Failed to install dev-libs/gmime-2.4.22, Log file: >>> '/var/log/portage/dev-libs:gmime-2.4.22:20110708-171940.log' * GNU info directory index is up-to-date. data ~ # uname -a Linux data 2.6.37-gentoo-r4 #3 SMP PREEMPT Fri May 20 23:39:52 CEST 2011 i686 AMD Phenom(tm) II X4 810 Processor AuthenticAMD GNU/Linux data ~ # eix vserver-sources [I] sys-kernel/vserver-sources Available versions: (2.2.0.7) 2.2.0.7!b!s (2.2.0.7-r1) ~2.2.0.7-r1!b!s (2.3.0.36.31) ~2.3.0.36.31!b!s (2.3.0.36.32) 2.3.0.36.32!b!s {build deblob symlink} Installed versions: 2.3.0.36.32(2.3.0.36.32)!b!s(12:40:34 05/08/11)(-build -deblob -symlink) Homepage: http://www.gentoo.org/proj/en/vps/ Description: Full sources including Gentoo and Linux-VServer patchsets for the 2.6 kernel tree.
$ eix glibc [I] sys-libs/glibc Available versions: (2.2) ~2.9_p20081201-r3!s 2.10.1-r1!s 2.11.3!s ~2.12.1-r3!s 2.12.2!s ~2.13-r2!s ~2.13-r3!s **2.14!s {crosscompile_opts_headers-only debug gd glibc-omitfp hardened multilib nls profile selinux vanilla} Installed versions: 2.12.2(2.2)!s(23:22:31 05/20/11)(gd nls -crosscompile_opts_headers-only -debug -glibc-omitfp -hardened -multilib -profile -selinux -vanilla) Homepage: http://www.gnu.org/software/libc/libc.html Description: GNU libc6 (also called glibc2) C library
Maybe unpack an official stage3, chroot into it, and see if you can reproduce the bug in there. Given that you reproduced the problem with the gentoo-kernel, it seems that your userland is broken somehow.
(In reply to comment #19) > what filesystem is this on? > > does the lockfile exists for a died emerge in the filesystem? data ~ # ls -l /var/lib/portage/config -rw-rw---- 1 root portage 107696 Jul 7 14:48 /var/lib/portage/config data ~ # df /var/lib/portage/config Filesystem 1K-blocks Used Available Use% Mounted on /dev/md2 9621816 7613228 1519816 84% / > > would be interesting to know what the value of myfd is, and what lsof would say > about python at the moment it hits the error how can one do lsof when the process is allready gone... (or where can i insert a call to system('lsof ...'); print "myfd=",$myfd;
And from mount: /dev/md2 on / type ext3 (rw,noatime,errors=continue,acl,barrier=0,data=writeback,usrquota,grpquota) The system is a quadcore Phenom processor.
After adding: >>> try: if myfd is None: myfd = os.open(lockfilename, os.O_WRONLY,0o660) unlinkfile = 1 >>> writemsg(_("myfd = %d\n") % myfd) locking_method(myfd,fcntl.LOCK_UN) except OSError: if isinstance(lockfilename, basestring): os.close(myfd) raise IOError(_("Failed to unlock file '%s'\n") % lockfilename) This is the result: /var/tmp/portage/dev-libs/gmime-2.4.22/image/usr/lib/libgmime-2.4.la: Updating... myfd = 3 strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/lib/libgmime-2.4.so.2.4.22 usr/bin/gmime-uuencode-2.4 usr/bin/gmime-uudecode-2.4 usr/lib/libgmime-2.4.a removing executable bit: usr/lib/libgmime-2.4.la myfd = 3 >>> Installing (2 of 3) dev-libs/gmime-2.4.22 myfd = 4 myfd = 3 myfd = 3 myfd = 3 myfd = 3 Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 222, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor myfd = 12 myfd = 6 myfd = 3 >>> Failed to install dev-libs/gmime-2.4.22, Log file:
I also added a catch IOError clause, and that printer 3 for myfd. and the mentioned /..../config file as name. Now for the stage3 + chroot.
>>> Installing (2 of 3) dev-libs/gmime-2.4.22 @OSERR: myfd = 3 Filename: /var/lib/portage/config unlinkfile 0 Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor >>> Failed to install dev-libs/gmime-2.4.22, Log file: >>> '/var/log/portage/dev-libs:gmime-2.4.22:20110708-214826.log' LSOF output COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME emerge 12846 root cwd DIR 9,2 4096 538561 /root emerge 12846 root rtd DIR 9,2 4096 2 / emerge 12846 root txt REG 9,2 5368 900490 /usr/bin/python2.7 emerge 12846 root mem REG 9,2 687208 900673 /usr/lib/python2.7/lib-dynload/unicodedata.so emerge 12846 root mem REG 9,2 323096 935694 /lib/libncursesw.so.5.7 emerge 12846 root mem REG 9,2 65984 900780 /usr/lib/python2.7/lib-dynload/_curses.so emerge 12846 root mem REG 9,2 19012 900674 /usr/lib/python2.7/lib-dynload/_locale.so emerge 12846 root mem REG 9,2 18492 705023 /usr/lib/python2.7/site-packages/Crypto/Hash/RIPEMD160.so emerge 12846 root mem REG 9,2 156968 688468 /usr/lib/libexpat.so.1.5.2 emerge 12846 root mem REG 9,2 10268 705022 /usr/lib/python2.7/site-packages/Crypto/Hash/SHA256.so emerge 12846 root mem REG 9,2 68584 900683 /usr/lib/python2.7/lib-dynload/cPickle.so emerge 12846 root mem REG 9,2 41860 900833 /usr/lib/python2.7/lib-dynload/pyexpat.so emerge 12846 root mem REG 9,2 71296 696411 /lib/libresolv-2.12.2.so emerge 12846 root mem REG 9,2 9368 690880 /lib/libkeyutils-1.2.so emerge 12846 root mem REG 9,2 26060 852143 /usr/lib/libkrb5support.so.0.1 emerge 12846 root mem REG 9,2 13628 736137 /lib/libcom_err.so.2.1 emerge 12846 root mem REG 9,2 140872 852041 /usr/lib/libk5crypto.so.3.1 emerge 12846 root mem REG 9,2 733232 852054 /usr/lib/libkrb5.so.3.3 emerge 12846 root mem REG 9,2 356188 966553 /usr/lib/libssl.so.1.0.0 emerge 12846 root mem REG 9,2 35584 900834 /usr/lib/python2.7/lib-dynload/_elementtree.so emerge 12846 root mem REG 9,2 17724 900746 /usr/lib/python2.7/lib-dynload/termios.so emerge 12846 root mem REG 9,2 21388 900818 /usr/lib/python2.7/lib-dynload/zlib.so emerge 12846 root mem REG 9,2 28524 900709 /usr/lib/python2.7/lib-dynload/_ssl.so emerge 12846 root mem REG 9,2 1484288 966551 /usr/lib/libcrypto.so.1.0.0 emerge 12846 root mem REG 9,2 10580 900665 /usr/lib/python2.7/lib-dynload/_functools.so emerge 12846 root mem REG 9,2 53840 900708 /usr/lib/python2.7/lib-dynload/_socket.so emerge 12846 root mem REG 9,2 9980 900658 /usr/lib/python2.7/lib-dynload/_random.so emerge 12846 root mem REG 9,2 30140 900536 /usr/lib/python2.7/lib-dynload/math.so emerge 12846 root mem REG 9,2 124868 900664 /usr/lib/python2.7/lib-dynload/_io.so emerge 12846 root mem REG 9,2 79352 711728 /lib/libz.so.1.2.5 emerge 12846 root mem REG 9,2 15132 900711 /usr/lib/python2.7/lib-dynload/_hashlib.so emerge 12846 root mem REG 9,2 9972 900759 /usr/lib/python2.7/lib-dynload/resource.so emerge 12846 root mem REG 9,2 36136 900493 /usr/lib/python2.7/lib-dynload/array.so emerge 12846 root mem REG 9,2 10356 900677 /usr/lib/python2.7/lib-dynload/grp.so emerge 12846 root mem REG 9,2 19228 900831 /usr/lib/python2.7/lib-dynload/binascii.so emerge 12846 root mem REG 9,2 30600 899843 /usr/lib/python2.7/lib-dynload/_struct.so emerge 12846 root mem REG 9,2 17212 900675 /usr/lib/python2.7/lib-dynload/fcntl.so emerge 12846 root mem REG 9,2 22128 900679 /usr/lib/python2.7/lib-dynload/select.so emerge 12846 root mem REG 9,2 22124 900537 /usr/lib/python2.7/lib-dynload/strop.so emerge 12846 root mem REG 9,2 16620 900662 /usr/lib/python2.7/lib-dynload/_heapq.so emerge 12846 root mem REG 9,2 46436 900570 /usr/lib/python2.7/lib-dynload/itertools.so emerge 12846 root mem REG 9,2 29776 900663 /usr/lib/python2.7/lib-dynload/operator.so emerge 12846 root mem REG 9,2 149256 696512 /lib/libm-2.12.2.so emerge 12846 root mem REG 9,2 9612 696489 /lib/libutil-2.12.2.so emerge 12846 root mem REG 9,2 9604 693624 /lib/libdl-2.12.2.so emerge 12846 root mem REG 9,2 1442204 696462 /lib/libc-2.12.2.so emerge 12846 root mem REG 9,2 121220 696505 /lib/libpthread-2.12.2.so emerge 12846 root mem REG 9,2 1464620 899849 /usr/lib/libpython2.7.so.1.0 emerge 12846 root mem REG 9,2 11276 900660 /usr/lib/python2.7/lib-dynload/_bisect.so emerge 12846 root mem REG 9,2 25228 900659 /usr/lib/python2.7/lib-dynload/_collections.so emerge 12846 root mem REG 9,2 16688 900682 /usr/lib/python2.7/lib-dynload/cStringIO.so emerge 12846 root mem REG 9,2 18492 900556 /usr/lib/python2.7/lib-dynload/time.so emerge 12846 root mem REG 9,2 121964 696474 /lib/ld-2.12.2.so emerge 12846 root 0u CHR 136,0 0t0 3 /dev/pts/0 emerge 12846 root 1w FIFO 0,6 0t0 1755015 pipe emerge 12846 root 2w FIFO 0,6 0t0 1755015 pipe emerge 12846 root 11w FIFO 0,6 0t0 1755016 pipe emerge 14577 root cwd DIR 9,2 4096 538561 /root emerge 14577 root rtd DIR 9,2 4096 2 / emerge 14577 root txt REG 9,2 5368 900490 /usr/bin/python2.7 emerge 14577 root mem REG 9,2 687208 900673 /usr/lib/python2.7/lib-dynload/unicodedata.so emerge 14577 root mem REG 9,2 323096 935694 /lib/libncursesw.so.5.7 emerge 14577 root mem REG 9,2 65984 900780 /usr/lib/python2.7/lib-dynload/_curses.so emerge 14577 root mem REG 9,2 19012 900674 /usr/lib/python2.7/lib-dynload/_locale.so emerge 14577 root mem REG 9,2 18492 705023 /usr/lib/python2.7/site-packages/Crypto/Hash/RIPEMD160.so emerge 14577 root mem REG 9,2 156968 688468 /usr/lib/libexpat.so.1.5.2 emerge 14577 root mem REG 9,2 10268 705022 /usr/lib/python2.7/site-packages/Crypto/Hash/SHA256.so emerge 14577 root mem REG 9,2 68584 900683 /usr/lib/python2.7/lib-dynload/cPickle.so emerge 14577 root mem REG 9,2 41860 900833 /usr/lib/python2.7/lib-dynload/pyexpat.so emerge 14577 root mem REG 9,2 71296 696411 /lib/libresolv-2.12.2.so emerge 14577 root mem REG 9,2 9368 690880 /lib/libkeyutils-1.2.so emerge 14577 root mem REG 9,2 26060 852143 /usr/lib/libkrb5support.so.0.1 emerge 14577 root mem REG 9,2 13628 736137 /lib/libcom_err.so.2.1 emerge 14577 root mem REG 9,2 140872 852041 /usr/lib/libk5crypto.so.3.1 emerge 14577 root mem REG 9,2 733232 852054 /usr/lib/libkrb5.so.3.3 emerge 14577 root mem REG 9,2 356188 966553 /usr/lib/libssl.so.1.0.0 emerge 14577 root mem REG 9,2 35584 900834 /usr/lib/python2.7/lib-dynload/_elementtree.so emerge 14577 root mem REG 9,2 17724 900746 /usr/lib/python2.7/lib-dynload/termios.so emerge 14577 root mem REG 9,2 21388 900818 /usr/lib/python2.7/lib-dynload/zlib.so emerge 14577 root mem REG 9,2 28524 900709 /usr/lib/python2.7/lib-dynload/_ssl.so emerge 14577 root mem REG 9,2 1484288 966551 /usr/lib/libcrypto.so.1.0.0 emerge 14577 root mem REG 9,2 10580 900665 /usr/lib/python2.7/lib-dynload/_functools.so emerge 14577 root mem REG 9,2 53840 900708 /usr/lib/python2.7/lib-dynload/_socket.so emerge 14577 root mem REG 9,2 9980 900658 /usr/lib/python2.7/lib-dynload/_random.so emerge 14577 root mem REG 9,2 30140 900536 /usr/lib/python2.7/lib-dynload/math.so emerge 14577 root mem REG 9,2 124868 900664 /usr/lib/python2.7/lib-dynload/_io.so emerge 14577 root mem REG 9,2 79352 711728 /lib/libz.so.1.2.5 emerge 14577 root mem REG 9,2 15132 900711 /usr/lib/python2.7/lib-dynload/_hashlib.so emerge 14577 root mem REG 9,2 9972 900759 /usr/lib/python2.7/lib-dynload/resource.so emerge 14577 root mem REG 9,2 36136 900493 /usr/lib/python2.7/lib-dynload/array.so emerge 14577 root mem REG 9,2 10356 900677 /usr/lib/python2.7/lib-dynload/grp.so emerge 14577 root mem REG 9,2 19228 900831 /usr/lib/python2.7/lib-dynload/binascii.so emerge 14577 root mem REG 9,2 30600 899843 /usr/lib/python2.7/lib-dynload/_struct.so emerge 14577 root mem REG 9,2 17212 900675 /usr/lib/python2.7/lib-dynload/fcntl.so emerge 14577 root mem REG 9,2 22128 900679 /usr/lib/python2.7/lib-dynload/select.so emerge 14577 root mem REG 9,2 22124 900537 /usr/lib/python2.7/lib-dynload/strop.so emerge 14577 root mem REG 9,2 16620 900662 /usr/lib/python2.7/lib-dynload/_heapq.so emerge 14577 root mem REG 9,2 46436 900570 /usr/lib/python2.7/lib-dynload/itertools.so emerge 14577 root mem REG 9,2 29776 900663 /usr/lib/python2.7/lib-dynload/operator.so emerge 14577 root mem REG 9,2 149256 696512 /lib/libm-2.12.2.so emerge 14577 root mem REG 9,2 9612 696489 /lib/libutil-2.12.2.so emerge 14577 root mem REG 9,2 9604 693624 /lib/libdl-2.12.2.so emerge 14577 root mem REG 9,2 1442204 696462 /lib/libc-2.12.2.so emerge 14577 root mem REG 9,2 121220 696505 /lib/libpthread-2.12.2.so emerge 14577 root mem REG 9,2 1464620 899849 /usr/lib/libpython2.7.so.1.0 emerge 14577 root mem REG 9,2 11276 900660 /usr/lib/python2.7/lib-dynload/_bisect.so emerge 14577 root mem REG 9,2 25228 900659 /usr/lib/python2.7/lib-dynload/_collections.so emerge 14577 root mem REG 9,2 16688 900682 /usr/lib/python2.7/lib-dynload/cStringIO.so emerge 14577 root mem REG 9,2 18492 900556 /usr/lib/python2.7/lib-dynload/time.so emerge 14577 root mem REG 9,2 121964 696474 /lib/ld-2.12.2.so emerge 14577 root 0u CHR 136,0 0t0 3 /dev/pts/0 emerge 14577 root 1u CHR 136,0 0t0 3 /dev/pts/0 emerge 14577 root 2u CHR 136,0 0t0 3 /dev/pts/0 emerge 14577 root 3u IPv4 1727594 0t0 TCP data.local:40176->noci.xs4all.nl:xmpp-client (ESTABLISHED) emerge 14577 root 4r FIFO 0,6 0t0 1755015 pipe emerge 14577 root 5u IPv4 1727599 0t0 TCP data.local:40177->noci.xs4all.nl:xmpp-client (ESTABLISHED) emerge 14577 root 6uW REG 9,2 0 1158294 /var/tmp/portage/dev-libs/.gmime-2.4.22.portage_lockfile emerge 14577 root 8w REG 9,2 89867 578485 /var/log/portage/dev-libs:gmime-2.4.22:20110708-214826.log emerge 14577 root 9u CHR 136,0 0t0 3 /dev/pts/0 emerge 14577 root 10r FIFO 0,6 0t0 1755016 pipe emerge 14577 root 12uW REG 9,2 0 534719 /var/db/.pkg.portage_lockfile
This is the code I modified ( my first ever attempt at python). try: if myfd is None: myfd = os.open(lockfilename, os.O_WRONLY,0o660) unlinkfile = 1 locking_method(myfd,fcntl.LOCK_UN) except IOError: os.system(_("/usr/bin/lsof >/tmp/t.t")) writemsg(_("@OSERR: myfd = %d\n") % myfd) writemsg(_("Filename: %(lock)s unlinkfile %(unl)d\n") % {"lock":lockfilename, "unl":unlinkfile }) raise except OSError: if isinstance(lockfilename, basestring): os.close(myfd) raise IOError(_("Failed to unlock file '%s'\n") % lockfilename) the /tmp/t.t is in the previous post, slightly trimmed to anything that could be related to emerge .../ python ...
if I understand the lsof output well, then fd 3 is a TCP socket in your case (to some jabber thing?) ...
(In reply to comment #32) > if I understand the lsof output well, then fd 3 is a TCP socket in your case > (to some jabber thing?) ... If that's true, then maybe it helps to remove jabber from PORTAGE_ELOG_SYSTEM, though I don't know how the jabber module would manage to cause file descriptor interference like this. Maybe the module needs to be fixed to close its TCP connection when it's not needed.
I had an 'emerge -1e system' done last night and that made no difference, Indeed, disabling the jabber thing does provide a clean build. But the jabber thing is enabled on ALL systems i have. And this is the only one complaining.
BTW, the jabber thing is app-portage/portage-mod_jabber-0.0.5.1
You could try rebuilding app-portage/portage-mod_jabber and dev-python/xmpppy, and check your versions of dev-python/xmpppy.
(In reply to comment #36) > You could try rebuilding app-portage/portage-mod_jabber and dev-python/xmpppy, > and check your versions of dev-python/xmpppy. See below: data ~ # eix xmpppy [I] dev-python/xmpppy Available versions: (~)0.5.0_rc1 {doc} Installed versions: 0.5.0_rc1(18:37:52 07/09/11)(-doc) Homepage: http://xmpppy.sourceforge.net/ Description: Python library providing easy scripting with Jabber data ~ # eix mod_jabber [I] app-portage/portage-mod_jabber Available versions: (~)0.0.3 (~)0.0.5.1 Installed versions: 0.0.5.1(18:38:17 07/09/11) Homepage: http://usrportage.de/ Description: A notification module for the portage elog-system to notify via the XMPP (Jabber) protocol
Created attachment 279519 [details, diff] fix mod_jabber to disconnect its socket Save as /tmp/mod_jabber.patch and apply as follows: patch /usr/lib/portage/pym/portage/elog/mod_jabber.py /tmp/mod_jabber.patch
(In reply to comment #38) > Created attachment 279519 [details, diff] > fix mod_jabber to disconnect its socket > > Save as /tmp/mod_jabber.patch and apply as follows: > > patch /usr/lib/portage/pym/portage/elog/mod_jabber.py /tmp/mod_jabber.patch usr/lib/libgmime-2.4.a removing executable bit: usr/lib/libgmime-2.4.la >>> Installing (2 of 3) dev-libs/gmime-2.4.22 Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4073, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3413, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 240, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor >>> Failed to install dev-libs/gmime-2.4.22, Log file: >>> '/var/log/portage/dev-libs:gmime-2.4.22:20110709-171422.log' * GNU info directory index is up-to-date. data ~ # tail /usr/lib/portage/pym/portage/elog/mod_jabber.py if not auth: raise PortageException ("!!! Could not authentificate to %s" %server) if auth <> 'sasl': raise PortageException ("!!! Unable to perform SASL auth to %s" %server) message = xmpp.protocol.Message (recipient, fulltext, "message", subject) client.send (message) client.disconnect() except Exception, e: raise PortageException ("!!! An error occured while sending a jabber message to "+str(recipient)+": "+str(e))
This is only happening for New modules, is it possible that the config file is closed, but that the fd status of the lock isn't cleared in the object. It makes no sense to update the config file for such a new package. The xmpppy / portage-mod_jabber isn't aware of the units involved. Appearantly the unlock in emerge is assumed to be open, has been opened (unit 3) but is not invalidated after a previous close. Then the assumption that a file will be reopened on that unit seems somewhat rickety.
(In reply to comment #40) > Then the assumption that a file will be reopened on that unit seems somewhat > rickety. My understanding of the open() function is that it's supposed to create a new file descriptor in any case, so it shouldn't matter you the process happens to have another file descriptor open for the same file path. For reference, here's the single unix specification of the function: http://pubs.opengroup.org/onlinepubs/9699919799/functions/open.html
if you have: x = open("blabla"...); ... close(x) ... y = open("blueblue"...); Now if there is code with an assumtion on x it might not be valid anymore. btw another close(x) will disassociate the y<-> blueblue link too. Now if x happens to be 3 it is the first user file (re)opened... fd={0,1,2} are stdin, stdout, stderr. y might happen to be the same value as x, (no guarantee, see dup() en dup2() for that kind of functionality). The kernel will start at 0 and use the first free number for the next value to be returned from open()/creat()
(In reply to comment #42) > if you have: > x = open("blabla"...); > ... > close(x) > ... > y = open("blueblue"...); > > Now if there is code with an assumtion on x it might not be valid anymore. Of course. I don't know of any code making assumptions like that and it would obviously be flawed if it did.
Example from the 2nd system showing a crash.. --- replaced obj /usr/include/curl/curl.h --- replaced dir /usr/include/curl --- replaced dir /usr/include --- replaced obj /usr/bin/curl-config --- replaced obj /usr/bin/curl --- replaced dir /usr/bin --- replaced dir /usr ebuild-ipc: daemon process not detected * The ebuild phase 'postrm' has exited unexpectedly. This type of behavior * is known to be triggered by things such as failed variable assignments * (bug #190128) or bad substitution errors (bug #200313). Normally, before * exiting, bash should have displayed an error message above. If bash did * not produce an error message above, it's possible that the ebuild has * called `exit` when it should have called `die` instead. This behavior * may also be triggered by a corrupt bash binary or a hardware problem * such as memory or cpu malfunction. If the problem is not reproducible or * it appears to occur randomly, then it is likely to be triggered by a * hardware problem. If you suspect a hardware problem then you should try * some basic hardware diagnostics such as memtest. Please do not report * this as a bug unless it is consistently reproducible and you are sure * that your bash binary and hardware are functioning properly. ebuild-ipc: daemon process not detected * The ebuild phase 'die_hooks' has exited unexpectedly. This type of * behavior is known to be triggered by things such as failed variable * assignments (bug #190128) or bad substitution errors (bug #200313). * Normally, before exiting, bash should have displayed an error message * above. If bash did not produce an error message above, it's possible * that the ebuild has called `exit` when it should have called `die` * instead. This behavior may also be triggered by a corrupt bash binary or * a hardware problem such as memory or cpu malfunction. If the problem is * not reproducible or it appears to occur randomly, then it is likely to * be triggered by a hardware problem. If you suspect a hardware problem * then you should try some basic hardware diagnostics such as memtest. * Please do not report this as a bug unless it is consistently * reproducible and you are sure that your bash binary and hardware are * functioning properly. !!! FAILED postrm: 1 * The 'postrm' phase of the 'net-misc/curl-7.21.4' package has failed with * exit value 1. * * The problem occurred while executing the ebuild file named * 'curl-7.21.4.ebuild' located in the '/var/db/pkg/net-misc/curl-7.21.4' * directory. If necessary, manually remove the environment.bz2 file and/or * the ebuild file located in that directory. * * Removal of the environment.bz2 file is preferred since it may allow the * removal phases to execute successfully. The ebuild will be sourced and * the eclasses from the current portage tree will be used when necessary. * Removal of the ebuild file will cause the pkg_prerm() and pkg_postrm() * removal phases to be skipped entirely. Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4261, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3667, in treewalk preserve_paths=preserve_paths) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 1811, in unmerge builddir_lock.unlock() File "/usr/lib/portage/pym/_emerge/EbuildBuildDir.py", line 91, in unlock self._lock_obj.unlock() File "/usr/lib/portage/pym/_emerge/AsynchronousLock.py", line 95, in unlock unlockfile(self._imp) File "/usr/lib/portage/pym/portage/locks.py", line 214, in unlockfile os.close(myfd) File "/usr/lib/portage/pym/portage/__init__.py", line 215, in __call__ rval = self._func(*wrapped_args, **wrapped_kwargs) OSError: [Errno 9] Bad file descriptor
pkgcore-0.7.7-r1 was installed too, (after previous message) the reproducer (unmerge libnl...) emerge libvirt now doesn't reproduce anymore... Last week it still worked so I guess a problem might be caused there?
(ebuild of ???, strace, lxml, a2ps...) fails on strace. [ same errors ] emerge --resume produces: >>> /usr/lib/python3.1/site-packages/lxml/objectify.so >>> /usr/lib/python3.1/site-packages/lxml/etreepublic.pxd >>> /usr/lib/python3.1/site-packages/lxml/ElementInclude.py Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4261, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3590, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 242, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor >>> Failed to install dev-python/lxml-2.3.1, Log file: It happens after files are put in there destination directory & before updating the package db, emerge --resume [lxml, a2ps, ...] builds the same package again... and has the following on "pre merge": strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/lib/python2.7/site-packages/lxml/etree.so usr/lib/python2.7/site-packages/lxml/objectify.so usr/lib/python3.1/site-packages/lxml/etree.so usr/lib/python3.1/site-packages/lxml/objectify.so >>> Installing (1 of 3) dev-python/lxml-2.3.1 * checking 87 files for package collisions * This package will overwrite one or more files that may belong to other * packages (see list below). You can use a command such as `portageq * owners / <filename>` to identify the installed package that owns a * file. If portageq reports that only one package owns a file then do * NOT file a bug report. A bug report is only useful if it identifies at * least two or more packages that are known to install the same file(s). * If a collision occurs and you can not explain where the file came from * then you should simply ignore the collision since there is not enough * information to determine if a real problem exists. Please do NOT file * a bug report at http://bugs.gentoo.org unless you report exactly which * two packages install the same file(s). Once again, please do NOT file * a bug report unless you have completely understood the above message. * * Detected file collision(s): * * /usr/share/doc/lxml-2.3.1/README.txt.bz2 * /usr/lib/python2.7/site-packages/lxml/tree.pxd * /usr/lib/python2.7/site-packages/lxml/etree_defs.h * /usr/lib/python2.7/site-packages/lxml/etreepublic.pxd * /usr/lib/python2.7/site-packages/lxml-2.3.1-py2.7.egg-info/top_level.txt * /usr/lib/python2.7/site-packages/lxml-2.3.1-py2.7.egg-info/SOURCES.txt * /usr/lib/python2.7/site-packages/lxml-2.3.1-py2.7.egg-info/dependency_links.txt * /usr/lib/python2.7/site-packages/lxml-2.3.1-py2.7.egg-info/not-zip-safe * /usr/lib/python2.7/site-packages/lxml-2.3.1-py2.7.egg-info/PKG-INFO * /usr/lib/python3.1/site-packages/lxml-2.3.1-py3.1.egg-info/top_level.txt * /usr/lib/python3.1/site-packages/lxml-2.3.1-py3.1.egg-info/SOURCES.txt * /usr/lib/python3.1/site-packages/lxml-2.3.1-py3.1.egg-info/dependency_links.txt * /usr/lib/python3.1/site-packages/lxml-2.3.1-py3.1.egg-info/not-zip-safe * /usr/lib/python3.1/site-packages/lxml-2.3.1-py3.1.egg-info/PKG-INFO * /usr/lib/python3.1/site-packages/lxml/tree.pxd * /usr/lib/python3.1/site-packages/lxml/etree_defs.h * /usr/lib/python3.1/site-packages/lxml/etreepublic.pxd * * Searching all installed packages for file collisions... * * Press Ctrl-C to Stop * & succeeeds, for lxml, just to stop again in a2ps: --- /etc/a2ps/ >>> /etc/a2ps/a2ps.cfg >>> /etc/a2ps/a2ps-site.cfg Traceback (most recent call last): File "/usr/lib/portage/pym/portage/dbapi/_MergeProcess.py", line 246, in _spawn prev_mtimes=self.prev_mtimes, counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 4261, in merge counter=counter) File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 3590, in treewalk self.vartree.dbapi._fs_unlock() File "/usr/lib/portage/pym/portage/dbapi/vartree.py", line 242, in _fs_unlock unlockfile(self._fs_lock_obj) File "/usr/lib/portage/pym/portage/locks.py", line 221, in unlockfile locking_method(myfd,fcntl.LOCK_UN) IOError: [Errno 9] Bad file descriptor
This issue is very similar to one that I've experience when running portage with PyPy, apparently related to PyPy garbage collector behavior, as noted in the following commit: http://git.overlays.gentoo.org/gitweb/?p=proj/portage.git;a=commit;h=46107423f4a039af6528d14cb86123a05a67f85f
(In reply to comment #38) > Created attachment 279519 [details, diff] [details, diff] > fix mod_jabber to disconnect its socket If this patch doesn't do the trick, then it seems as though xmpppy leaves a socket open after we call disconnect, and that seems to trigger delayed garbage collection that's similar to the PyPy issue mentioned in comment #47.
This should fix it: http://git.overlays.gentoo.org/gitweb/?p=proj/portage.git;a=commit;h=144c23efbb4e9565debad03c13c5bcab833a8336
This is fixed in 2.1.10.52 and 2.2.0_alpha96.
