Some QAs while emerging openmpi on a bleeding edge system * QA Notice: Unrecognized configure options: * * configure: WARNING: unrecognized options: --enable-pretty-print-stacktrace, --enable-orterun-prefix-by-default, --without-slurm, --enable-contrib-no-build, --enable-mpi-cxx, --disable-io-romio, --disable-heterogeneous, --without-tm, --disable-ipv6, --enable-ltdl-convenience * configure: WARNING: unrecognized options: --enable-pretty-print-stacktrace, --enable-orterun-prefix-by-default, --without-slurm, --enable-contrib-no-build, --enable-mpi-cxx, --disable-io-romio, --disable-heterogeneous, --without-tm, --disable-ipv6, --enable-ltdl-convenience * QA Notice: Package has poor programming practices which may compile * fine but exhibit random runtime failures. * dpm_orte.c:963:5: warning: attempt to free a non-heap object ‘ompi_mpi_comm_null’ * dpm_orte.c:965:5: warning: attempt to free a non-heap object ‘ompi_mpi_group_null’ * dpm_orte.c:967:5: warning: attempt to free a non-heap object ‘ompi_mpi_errors_are_fatal’ Portage 2.2.0_alpha7 (default/linux/amd64/10.0/developer, gcc-4.5.1-asneeded, glibc-2.12.1-r3, 2.6.29-gentoo-r6 x86_64) ================================================================= System uname: Linux-2.6.29-gentoo-r6-x86_64-Quad-Core_AMD_Opteron-tm-_Processor_8354-with-gentoo-2.0.1 Timestamp of tree: Unknown app-shells/bash: 4.1_p9 dev-lang/python: 2.7.2_pre20101205::python, 3.1.4_pre20101205::python, 3.2_pre20101205::python dev-util/cmake: 2.8.1-r2 sys-apps/baselayout: 2.0.1-r1 sys-apps/openrc: 0.6.7 sys-apps/sandbox: 2.4 sys-devel/autoconf: 2.68 sys-devel/automake: 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.5.1-r1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.4-r1 sys-devel/make: 3.82 virtual/os-headers: 2.6.36.1 (sys-kernel/linux-headers) Repositories: gentoo science python canfar cran bicatali ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=native -D_FORTIFY_SOURCE=2" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=native -D_FORTIFY_SOURCE=2" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests binpkg-logs collision-protect digest distlocks fixlafiles fixpackages multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms sign splitdebug strict test-fail-continue unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox" FFLAGS="-O2 -pipe -march=native -D_FORTIFY_SOURCE=2" GENTOO_MIRRORS="http://darkstar.ist.utl.pt/gentoo" LANG="en_GB.UTF-8" LC_ALL="en_CA.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--hash-style=gnu" LINGUAS="en" MAKEOPTS="-j33" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage/cvs" PORTDIR_OVERLAY="/usr/portage/sci /usr/portage/python /usr/portage/tvs /usr/portage/cran /usr/portage/bicatali" SYNC="cvs://bicatali@cvs.gentoo.org:/var/cvsroot" USE="3dnow 3dnowext R a52 aac acpi amd64 bash-completion berkdb blas bluetooth bzip2 cdr cli cracklib crypt cxx dri dts dvd dvdr emboss encode exif fam fftw firefox fits flac fortran gmp gsl hal hdf5 iconv lapack lcms libnotify mad metis mikmod mmx mng modules mp3 mp4 mpeg mudflap multilib ncurses netcdf nls nptl nptlonly octave ogg openmp pango pcre pdf ppds pppd qt3support readline sdl session smp snmp sparse sse sse2 ssl startup-notification sysfs tcpd threads truetype umfpack unicode usb vorbis x264 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" PHP_TARGETS="php5-2" RUBY_TARGETS="ruby18" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 256606 [details] build log gzipped
Openmpi's top level configure actually invokes a number of other configure scripts in sub-packages. Upstream is both aware of this and doesn't consider it to be anything more than a cosmetic issue. I tend to agree but I'm sure they would consider patches.
