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Bug 344917 - media-libs/tiff-4.0.0: tiffsplit fails with Segmentation fault
Summary: media-libs/tiff-4.0.0: tiffsplit fails with Segmentation fault
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Codec Project
URL: http://bugzilla.maptools.org/show_bug...
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2010-11-10 12:14 UTC by Juergen Rose
Modified: 2021-01-25 21:58 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Juergen Rose 2010-11-10 12:14:19 UTC
If I try to split a multipage tiff file (which 1699 containes 512x512 images) with
tiffsplit it fails with:
root@moose:/home/rose/Txt/projects/Tracking_Objects/Software/OpenCV/Examples/star_detector/example/sf_tmp(5)# tiffsplit 090520_60x_149_rfp_dish3stim_t0003.tif 
TIFFReadDirectory: Warning, Unknown field with tag 317 (0x13d) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 34361 (0x8639) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 34362 (0x863a) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 34363 (0x863b) encountered.
TIFFReadDirectory: Incorrect count for "ColorMap"; tag ignored.
Segmentation fault

I can open this multipage tiff with display (imagemagick-6.6.4.5) or with imagej without problems.

Reproducible: Always




root@moose:/home/rose/Txt/projects/Tracking_Objects/Software/OpenCV/Examples/star_detector/example/sf_tmp(8)# emerge --info tiff
Portage 2.1.9.24 (default/linux/amd64/10.0/desktop, gcc-4.5.1, glibc-2.12.1-r3, 2.6.36-gentoo x86_64)
=================================================================
                        System Settings
=================================================================
System uname: Linux-2.6.36-gentoo-x86_64-Intel-R-_Core-TM-2_Quad_CPU_Q9650_@_3.00GHz-with-gentoo-2.0.1
Timestamp of tree: Wed, 10 Nov 2010 03:00:01 +0000
app-shells/bash:     4.1_p9
dev-java/java-config: 2.1.11-r2
dev-lang/python:     2.6.6-r1, 3.1.2-r4
dev-util/cmake:      2.8.1-r2
sys-apps/baselayout: 2.0.1-r1
sys-apps/openrc:     0.6.3
sys-apps/sandbox:    2.3-r1
sys-devel/autoconf:  2.13, 2.68
sys-devel/automake:  1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1
sys-devel/binutils:  2.20.1-r1
sys-devel/gcc:       4.4.5, 4.5.1
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.10
sys-devel/make:      3.82
virtual/os-headers:  2.6.35 (sys-kernel/linux-headers)
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula googleearth AdobeFlash-10.1 cadsoft"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.3/ext-active/ /etc/php/cgi-php5.3/ext-active/ /etc/php/cli-php5.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests binpkg-logs distlocks fixlafiles fixpackages news parallel-fetch protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch"
FFLAGS="-march=nocona -O2 -pipe -fomit-frame-pointer"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="de fr"
MAKEOPTS="-j5"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/java-overlay /var/lib/layman/sunrise /var/lib/layman/arcon /var/lib/layman/pro-audio /var/lib/layman/n4g /var/lib/layman/qting-edge /usr/local/portage /var/lib/cpan"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="64bit R X Xaw3d a52 aac abiword acl acpi admin afs alsa amd64 ao apache2 applet archive arpack asf aspell assistant audacious audiofile automap automount bash-completion beagle berkdb blas blast bluetooth boo boost branding bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cg cgi chm cli consolekit corba cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds elf emacs emboss emf empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fpx fts3 fuse galago garmin gd gdal gdbm gedit geoip geolocation geos gif gimp ginac git glade glib gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 irda ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kdrive kerberos kpathsea kqemu kvm ladspa lame lapack latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lirc lm_sensors lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pango pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings q16 q32 qemu qhull qt3support qt4 quicktime readline reiserfs reports rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora threads thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wifi wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse                evdev               " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" PHP_TARGETS="php5-2" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" 
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

media-libs/tiff-4.0.0_beta6 was built with the following:
USE="cxx jbig jpeg (multilib) zlib -static-libs"
Comment 1 Michael Weber (RETIRED) gentoo-dev 2010-11-10 23:18:28 UTC
Cab you upload the failing tiff? Maybe this tiff file is corrupt and imagemagick just ignores the errors.
Comment 2 Juergen Rose 2010-11-11 09:47:23 UTC
Hello Michael,

maybe this file does not fulfill all rules for tiff files:

TIFFReadDirectory: Warning, Unknown field with tag 34363 (0x863b) encountered.
TIFFReadDirectory: Incorrect count for "ColorMap"; tag ignored.

but I can not only display the file with display from imagemagick I also can split the file with:

convert tiffsplit 090520_60x_149_rfp_dish3stim_t0003.tif %d.tif

and I get more 
The file has a size of 895 MB, I suppose it is to large a attachment. And I am not the owner of file. I will send a mail, how you can access the file.

Comment 3 Juergen Rose 2010-11-11 09:57:05 UTC
Sorry, for the incomplete last mail. I wanted to write that I get 1699 single tiff files with "convert 090520_60x_149_rfp_dish3stim_t0003.tif single%d.tif" and that the multipage tiff file is too large for a attachment.
Comment 4 Juergen Rose 2010-11-11 11:41:51 UTC
Btw., I also find a message from Segfault in system logs:
root@orca:/root(5)# dmesg | tail
[2935838.952959] conftest[29495]: segfault at 1 ip 00000000004054c3 sp 00007fff27350290 error 4 in conftest[400000+a2000]
[2935876.096976] conftest[10187]: segfault at 1 ip 00000000004054c3 sp 00007fff8dba3430 error 4 in conftest[400000+a2000]
[3031568.428011] test_12639[13032]: segfault at 0 ip 0000000000400679 sp 00007fffbe99ab00 error 4 in test_12639[400000+1000]
[3115028.373757] PM: Adding info for No Bus:0:22
[3128462.082062] PM: Removing info for No Bus:0:22
[3288226.959186] PM: Adding info for No Bus:0:22
[3550510.450528] PM: Removing info for No Bus:0:22
[3643010.005614] PM: Adding info for No Bus:0:22
[3661805.042017] PM: Removing info for No Bus:0:22
[3799322.177560] tiffsplit[8909]: segfault at 8 ip 00007fef59388aa4 sp 00007fff3a3055a0 error 6 in libtiff.so.5.0.3[7fef5937c000+6d000]
Comment 5 Juergen Rose 2010-12-10 12:44:18 UTC
Hi Michael,

I still have this issue with tiffsplit. Was you able to access the tiff file?

Regards Juergen
Comment 6 Arfrever Frehtes Taifersar Arahesis (RETIRED) gentoo-dev 2011-04-16 21:42:26 UTC
Does this bug occur with media-libs/tiff-4.0.0_beta7?
Comment 7 Samuli Suominen (RETIRED) gentoo-dev 2011-12-30 15:33:57 UTC
Please retry with tiff-4.0.0 final which is now in portage.   Reopen if you can still reproduce.
Comment 8 Juergen Rose 2012-01-01 19:42:26 UTC
The problem still persists:

rose@impala:/home_impala/rose/Tiff_split_test(18)$ tiffsplit 090520_60x_149_rfp_dish3stim_t0003.tif 
TIFFReadDirectory: Warning, Unknown field with tag 317 (0x13d) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 34361 (0x8639) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 34362 (0x863a) encountered.
TIFFReadDirectory: Warning, Unknown field with tag 34363 (0x863b) encountered.
TIFFReadDirectory: Incorrect count for "ColorMap"; tag ignored.
Speicherzugriffsfehler

rose@impala:/home_impala/rose/Tiff_split_test(24)$ qfile -v tiffsplit
media-libs/tiff-4.0.0 (/usr/bin/tiffsplit)

Please reopen.

Regards
Comment 9 Samuli Suominen (RETIRED) gentoo-dev 2012-01-02 05:45:04 UTC
You could have done that yourself but whatever, reopening.   

propably attaching a tiff image here for reproducing as well as upstream bug report and link here would advance the issue.
Comment 10 Juergen Rose 2012-01-03 13:42:55 UTC
Hi Samuli Suominen,
you can try http://141.89.194.24/~rose/090520_60x_149_rfp_dish3stim_t0003.tif
but have in mind that the file has a size of 853MB.

I filed alsa a bug at 
http://bugzilla.maptools.org/show_bug.cgi?id=2355 .

Regards Juergen
Comment 11 Pacho Ramos gentoo-dev 2012-06-16 09:04:11 UTC
Still valid with 4.0.1-r1?