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Bug 339753 - sci-biology/mothur: fails with forced --as-needed
Summary: sci-biology/mothur: fails with forced --as-needed
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: New packages (show other bugs)
Hardware: All Linux
: High QA (vote)
Assignee: Andrey Kislyuk (RETIRED)
Depends on:
Blocks: as-needed
  Show dependency tree
Reported: 2010-10-04 20:10 UTC by Diego Elio Pettenò (RETIRED)
Modified: 2010-10-05 08:28 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Build log (mothur-1.13.0:20101004-140306.log,37.56 KB, text/plain)
2010-10-04 20:11 UTC, Diego Elio Pettenò (RETIRED)

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Description Diego Elio Pettenò (RETIRED) gentoo-dev 2010-10-04 20:10:56 UTC
I'm reporting this bug because the package in summary fails to build when forcing --as-needed on through spec files (check out for details).

Please note that this bug _might_ apply to -Wl,--as-needed in LDFLAGS as well; in both cases it should be fixed. Also, if this is due to the package in question not respecting user-defined LDFLAGS, you should get to fix that too.

Check the attached build log.

Comment 1 Diego Elio Pettenò (RETIRED) gentoo-dev 2010-10-04 20:11:09 UTC
Created attachment 249584 [details]
Build log
Comment 2 Kacper Kowalik (Xarthisius) (RETIRED) gentoo-dev 2010-10-05 08:28:03 UTC
Reported upstream:

+*mothur-1.13.0-r1 (05 Oct 2010)
+  05 Oct 2010; Kacper Kowalik <>
+  -mothur-1.7.2-r1.ebuild, -mothur-1.13.0.ebuild, +mothur-1.13.0-r1.ebuild,
+  +files/mothur-1.13.0-makefile.patch, +files/mothur-1.13.0-overflows.patch:
+  Fix buffer overflows and building with --as-needed wrt bug 339753. Thanks
+  to Diego for the report. Correct dependencies. Drop old.