>>> Emerging (2 of 4) sci-chemistry/pdb-extract-1.700 * pdb-extract-v1.700-prod-src.tar.gz RMD160 SHA1 SHA256 size ;-) ... [ ok ] * checking ebuild checksums ;-) ... [ ok ] * checking auxfile checksums ;-) ... [ ok ] * checking miscfile checksums ;-) ... [ ok ] * CPV: sci-chemistry/pdb-extract-1.700 * REPO: gentoo * USE: elibc_glibc kernel_linux userland_GNU x86 >>> Unpacking source... >>> Unpacking pdb-extract-v1.700-prod-src.tar.gz to /var/tmp/portage/sci-chemistry/pdb-extract-1.700/work * Applying respect-cflags-and-fix-install.patch ... [ ok ] * Deleting redundant directories ... [ ok ] >>> Source unpacked in /var/tmp/portage/sci-chemistry/pdb-extract-1.700/work >>> Compiling source in /var/tmp/portage/sci-chemistry/pdb-extract-1.700/work/pdb-extract-v1.700-prod-src ... make -j9 Using platform specific configuration for system: gnu4 Platform configuration done. ------------------------------------------------------------ **** Making htmllib-v3.1 **** ------------------------------------------------------------ make[1]: Entering directory `/var/tmp/portage/sci-chemistry/pdb-extract-1.700/work/pdb-extract-v1.700-prod-src/htmllib-v3.1' i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -ggdb -ansi -Wall -Wno-deprecated -DHAVE_STRCASECMP -DINCL_TEMPLATE_SRC -DHAVE_PLACEMENT_NEW -I./include -I../include -I/usr/include/rcsb -c ./src/ndb_htmllib.C -o obj/ndb_htmllib.o ./src/ndb_htmllib.C:153:25: Fehler: ndb_misclib.h: Datei oder Verzeichnis nicht gefunden (=file not found) ./src/ndb_htmllib.C: In function »void ht_put_selection_navigator(FILE*, char*, char*, char*, char*, char*, int, int, int, int, int)«: ./src/ndb_htmllib.C:855: Fehler: »NDB_MSG_DEBUG« wurde in diesem Gültigkeitsbereich nicht definiert (=not defined in this scope) ./src/ndb_htmllib.C:855: Fehler: »ndb_log_message« wurde in diesem Gültigkeitsbereich nicht definiert ./src/ndb_htmllib.C:879: Fehler: »NDB_MSG_DEBUG« wurde in diesem Gültigkeitsbereich nicht definiert ./src/ndb_htmllib.C:879: Fehler: »ndb_log_message« wurde in diesem Gültigkeitsbereich nicht definiert ... make[1]: *** [obj/ndb_htmllib.o] Fehler 1 make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/pdb-extract-1.700/work/pdb-extract-v1.700-prod-src/htmllib-v3.1' make: *** [compile] Fehler 1 * ERROR: sci-chemistry/pdb-extract-1.700 failed: * make failed * * Call stack: * ebuild.sh, line 54: Called src_compile * environment, line 2275: Called die * The specific snippet of code: * emake || die "make failed" * * If you need support, post the output of 'emerge --info =sci-chemistry/pdb-extract-1.700', * the complete build log and the output of 'emerge -pqv =sci-chemistry/pdb-extract-1.700'. * The complete build log is located at '/var/tmp/portage/sci-chemistry/pdb-extract-1.700/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pdb-extract-1.700/temp/environment'. * S: '/var/tmp/portage/sci-chemistry/pdb-extract-1.700/work/pdb-extract-v1.700-prod-src'
(chroot x86) pinacolada ~ # emerge --info Portage 2.1.8.3 (default/linux/x86/10.0/desktop, gcc-4.3.4, glibc-2.11.2-r0, 2.6.34-gentoo-r10 i686) ================================================================= System uname: Linux-2.6.34-gentoo-r10-i686-Intel-R-_Core-TM-_i7_CPU_920_@_2.67GHz-with-gentoo-1.12.13 Timestamp of tree: Fri, 01 Oct 2010 23:00:01 +0000 app-shells/bash: 4.1_p7 dev-lang/python: 2.6.5-r3, 3.1.2-r4 dev-util/cmake: 2.8.1-r2 sys-apps/baselayout: 1.12.13 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.65-r1 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1-r1 sys-devel/gcc: 4.3.4, 4.4.3-r2 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b sys-devel/make: 3.81-r2 virtual/os-headers: 2.6.30-r1 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer -ggdb" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer -ggdb" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests collision-protect distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms splitdebug strict unmerge-logs unmerge-orphans userfetch userpriv usersandbox" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="de_DE.utf8@euro" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de en" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage/dilfridge" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acl acpi alsa berkdb bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam firefox flac fortran gdbm gif gpm gtk hal iconv ipv6 jpeg lcms ldap libnotify mad mikmod mmx mng modules mp3 mp4 mpeg mudflap ncurses nls nptl nptlonly ogg opengl openmp pam pango pcre pdf perl png ppds pppd python qt3support qt4 readline reflection sdl session spell sse sse2 ssl startup-notification svg sysfs tcpd tiff truetype unicode usb vorbis x264 x86 xcb xml xorg xulrunner xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de en" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="nv vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS (chroot x86) pinacolada ~ #
I am on the stabilizing all the ccp4 stuff. Then we can remove this version. *** This bug has been marked as a duplicate of bug 246255 ***
