emerging sci-libs/blas-atlas-3.9.23 fails with the following error lines: gcc -m32 -DL2SIZE=4194304 -I/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/include -I/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/..//include -I/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_PM -DATL_CPUMHZ=1733 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632 -O2 -march=pentium-m -pipe -m32 -o xzdfindCE zdfindCE.o \ /var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/src/blas/gemm/ATL_zdFindCE_mm.o /var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/lib/libatlas.a -lm /var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/bin/ATLrun.sh /var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/tune/blas/gemm xzdfindCE -f res/atlas_zdNKB.h assertion t1 > 0.0 failed, line 296 of file /var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/..//tune/blas/gemm/findCE.c TA TB M N K alpha beta CacheEdge TIME MFLOPS == == ====== ====== ====== ===== ===== ===== ===== ========= ========= ======== T N 80 2000 6553 1.0 0.0 1.0 0.0 0 5.602 1497.25 T N 80 2000 6553 1.0 0.0 1.0 0.0 32 -2.000 0.00 T N 80 2000 6553 1.0 0.0 1.0 0.0 64 -2.000 0.00 T N 80 2000 6553 1.0 0.0 1.0 0.0 128 5.600 1497.79 T N 80 2000 6553 1.0 0.0 1.0 0.0 256 6.218 1348.95 T N 80 2000 6553 1.0 0.0 1.0 0.0 512 5.573 1505.04 T N 80 2000 6553 1.0 0.0 1.0 0.0 1024 5.582 1502.62 T N 80 2000 6553 1.0 0.0 1.0 0.0 2048 6.220 1348.52 T N 80 2000 6553 1.0 0.0 1.0 0.0 4096 5.580 1503.16 make[4]: *** [zdRunFindCE] Error 255 make[4]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/tune/blas/gemm' make[3]: *** [res/atlas_zdNKB.h] Error 2 make[3]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/tune/blas/gemm' make[2]: *** [/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/tune/blas/gemm/res/atlas_zdNKB.h] Error 2 make[2]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/bin' ERROR 843 DURING CACHE EDGE DETECTION!!. make[2]: Entering directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/bin' cd /var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build ; make error_report make[3]: Entering directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build' make -f Make.top error_report make[4]: Entering directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build' uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG gcc -v 2>&1 >> bin/INSTALL_LOG/ERROR.LOG Using built-in specs. Target: i686-pc-linux-gnu Configured with: /var/tmp/portage/sys-devel/gcc-4.3.4/work/gcc-4.3.4/configure --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/4.3.4 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/4.3.4/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/4.3.4 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/4.3.4/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/4.3.4/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/4.3.4/include/g++-v4 --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --disable-altivec --disable-fixed-point --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --disable-multilib --enable-libmudflap --disable-libssp --disable-libgomp --disable-libgcj --with-arch=i686 --enable-languages=c,c++,treelang,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.3.4 p1.0, pie-10.1.5' Thread model: posix gcc version 4.3.4 (Gentoo 4.3.4 p1.0, pie-10.1.5) gcc -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG gcc: '-V' option must have argument make[4]: [error_report] Error 1 (ignored) gcc --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG tar cf error_PM32SSE2.tar Make.inc bin/INSTALL_LOG/* gzip --best error_PM32SSE2.tar mv error_PM32SSE2.tar.gz error_PM32SSE2.tgz make[4]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build' make[3]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build' make[2]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build/bin' Error report error_<ARCH>.tgz has been created in your top-level ATLAS directory. Be sure to include this file in any help request. cat: ../../CONFIG/error.txt: No such file or directory cat: ../../CONFIG/error.txt: No such file or directory make[1]: *** [build] Error 255 make[1]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS/gentoo-build' make: *** [build] Error 2 [31;01m*[0m ERROR: sci-libs/blas-atlas-3.9.23-r2 failed: [31;01m*[0m emake failed [31;01m*[0m [31;01m*[0m Call stack: [31;01m*[0m ebuild.sh, line 54: Called src_compile [31;01m*[0m environment, line 3069: Called die [31;01m*[0m The specific snippet of code: [31;01m*[0m emake -j1 || die "emake failed"; [31;01m*[0m [31;01m*[0m If you need support, post the output of 'emerge --info =sci-libs/blas-atlas-3.9.23-r2', [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-libs/blas-atlas-3.9.23-r2'. [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/temp/build.log'. [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/temp/environment'. [31;01m*[0m S: '/var/tmp/portage/sci-libs/blas-atlas-3.9.23-r2/work/ATLAS' Reproducible: Always Portage 2.1.8.3 (default/linux/x86/10.0/desktop, gcc-4.3.4, glibc-2.10.1-r1, 2.6.33-gentoo i686) ================================================================= System uname: Linux-2.6.33-gentoo-i686-Intel-R-_Pentium-R-_M_processor_1.73GHz-with-gentoo-2.0.1 Timestamp of tree: Fri, 23 Apr 2010 06:00:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 4.0_p37 dev-lang/python: 2.6.4-r99 dev-python/pycrypto: 2.1.0_beta1 dev-util/ccache: 2.4-r7 dev-util/cmake: 2.6.4-r3 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.1-r1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.18-r3 sys-devel/gcc: 4.3.4 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.33 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="* -@EULA" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=pentium-m -pipe" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=pentium-m -pipe" DISTDIR="/usr/portage/distfiles" EMERGE_DEFAULT_OPTS="--with-bdep y" FEATURES="assume-digests ccache distlocks fixpackages news nodoc parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="http://distfiles.gentoo.org" LDFLAGS="-Wl,-O1,--as-needed" LINGUAS="de" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage /home/gnuke/sage-experiments/sage-on-gentoo /home/gnuke/overlay" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X a52 aac acpi akonadi alsa amr aotuv asf bash-completion berkdb bittorrent branding bzip2 cairo cdda cddb cdparanoia cdr clamdtop cli consolekit cpudetection cracklib crypt css cups cxx dbus djvu dri dts dvb dvd dvdr dvdread ecl embedded exif fam ffmpeg flac fortran fts3 gd gdbm gif git gnutls graphics hal history i8x0 iconv irmc jabber jpeg jpeg2k kde kipi kpathsea latex lcms mailwrapper matroska mikmod mmx mmxext mng modules mp3 mp4 mpeg mudflap musicbrainz ncurses net nls no-seamonkey nptl nptlonly ogg opengl oscar otr pam pango pch pcre pdf perl plasma plotutils png policykit ppds pppd pstricks python qt qt3support qt4 rdesktop rdp readline redland reflex replaygain rtsp samba science secure-delete semantic-desktop sesame2 session spell sse sse2 ssl startup-notification svg sysfs tcpd theora threads tiff truetype unicode urandom usb userlocales vcd vim-with-x vorbis webkit win32codecs wireshark x264 x86 xcb xcomposite xine xml xorg xv xvid xvmc zip zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" DVB_CARDS="usb-af9015" ELIBC="glibc" INPUT_DEVICES="evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="intel" Unset: CPPFLAGS, CTARGET, FFLAGS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
I should note that sci-libs/blas-atlas-3.9.23 compiled and installed fine and -r3 also fails on my amd64 system.
Created attachment 228853 [details] the build.log the build.log
(In reply to comment #1) > I should note that sci-libs/blas-atlas-3.9.23 compiled and installed fine and > -r3 also fails on my amd64 system. > Could we have the build.log of the amd64 system as well?
failed to compile with the same error on x86 here.
(In reply to comment #3) > (In reply to comment #1) > > I should note that sci-libs/blas-atlas-3.9.23 compiled and installed fine and > > -r3 also fails on my amd64 system. > > > > Could we have the build.log of the amd64 system as well? > I just tried to emerge blas-atlas today and it worked fine - maybe I just misremembered that because lapack-atlas-3.9.23-r3 is the failing ebuild. See bug #317093 for complete build.log.
Dropped all atlas packages from tree. Please use sci-libs/atlas from sci overlay. If problem still exist with that package, please reopen the bug or file a new one.
