Bug 311919 – =sci-biology/infernal-1.0.2 : QA notice: make jobserver unavailable

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Myckel Habets (work) 2010-03-29 12:46:24 UTC]

sci-biology/infernal gives messages that jobserver is unavailable:

* QA Notice: make jobserver unavailable:
 *
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.

Reproducible: Always

Steps to Reproduce:
1. emerge sci-biology/infernal
2.
3.

Actual Results:  
* QA Notice: make jobserver unavailable:
 *
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.
 *      make[1]: warning: jobserver unavailable: using -j1.  Add `+' to parent make rule.

Expected Results:  
Using jobserver with respecting the make job parameter of the user.

emerge --info
Portage 2.1.7.17 (default/linux/x86/10.0, gcc-4.3.4, glibc-2.10.1-r1, 2.6.33-rc8-co-0.8.0 i686)
=================================================================
System uname: Linux-2.6.33-rc8-co-0.8.0-i686-Intel-R-_Pentium-R-_4_CPU_3.20GHz-with-gentoo-1.12.13
Timestamp of tree: Mon, 29 Mar 2010 07:15:01 +0000
app-shells/bash:     4.0_p37
dev-lang/python:     2.6.4-r1
dev-util/cmake:      2.6.4-r3
sys-apps/baselayout: 1.12.13
sys-apps/sandbox:    1.6-r2
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.9.6-r2, 1.10.3, 1.11.1
sys-devel/binutils:  2.18-r3
sys-devel/gcc:       4.3.4
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6b
virtual/os-headers:  2.6.30-r1
ACCEPT_KEYWORDS="x86"
ACCEPT_LICENSE="* -@EULA"
CBUILD="i686-pc-linux-gnu"
CFLAGS="-O2 -mtune=i686 -pipe"
CHOST="i686-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/X11/xkb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -mtune=i686 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests collision-protect distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict test unmerge-logs unmerge-orphans userfetch userpriv"
GENTOO_MIRRORS="ftp://ftp.ucsb.edu/pub/mirrors/linux/gentoo/ ftp://mirror.datapipe.net/gentoo"
LDFLAGS="-Wl,-O1,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage"
USE="X berkdb bzip2 cgi cleartype cli cracklib crypt cxx dbus dri examples fastcgi fortran gdbm gpm hal iconv ipv6 jpeg libnotify logrotate mmx modules mudflap mysql ncurses nptl nptlonly openmp pam pcre pdf perl php pic png posix pppd python readline reflection session spl sqlite sse sse2 ssl startup-notification svg sysfs tcpd threads thunar tiff truetype unicode x86 xcb xcomposite xft xml xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" RUBY_TARGETS="ruby18" USERLAND="GNU" VIDEO_CARDS="vesa"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

[Comment 1 Myckel Habets 2010-03-30 08:07:35 UTC]

Created attachment 225795 [details, diff]
Patch to fix this bug.

Patch 1/2

[Comment 2 Myckel Habets 2010-03-30 08:08:25 UTC]

Created attachment 225797 [details, diff]
Patch for the ebuild to include the jobserver fix patch.

Patch 2/2

[Comment 3 Myckel Habets 2010-03-30 08:09:00 UTC]

These patches should fix the bug. Please test.

[Comment 4 Kacper Kowalik (Xarthisius) (RETIRED) 2010-11-04 10:06:54 UTC]

+*infernal-1.0.2-r1 (04 Nov 2010)
+
+  04 Nov 2010; Kacper Kowalik <[e-mail]> -infernal-1.0.ebuild,
+  +infernal-1.0.2-r1.ebuild, +files/infernal-1.0.2-ldflags.patch,
+  +files/infernal-1.0.2-overflows.patch,
+  +files/infernal-1.0.2-parallel-build.patch:
+  Fix parallel build wrt bug 311919. Thanks to Myckel Habets
+  <[e-mail]> for patch and report. Fix buffer
+  overflow wrt bug 338179 and respect LDFLAGS wrt bug 338177. Thanks to
+  Diego Elio Pettenò for the reports. Drop old.
+