'emerge hdf-java' fails with: ... make[3]: Entering directory `/var/tmp/portage/dev-java/hdf-java-2.6.1/work/hdf-java/native/hdflib' mpicc -shared -Dx86_64 -fPIC -I. -I/usr/lib/icedtea6/include -I/usr/lib/icedtea6/include/linux -I/usr/include -c -o hdfstructsutil.o hdfstructsutil.c hdfstructsutil.c: In function 'getChunkInfo': hdfstructsutil.c:412: error: 'MAX_VAR_DIMS' undeclared (first use in this function) hdfstructsutil.c:412: error: (Each undeclared identifier is reported only once hdfstructsutil.c:412: error: for each function it appears in.) hdfstructsutil.c: In function 'makeChunkInfo': hdfstructsutil.c:503: error: 'MAX_VAR_DIMS' undeclared (first use in this function) make[3]: *** [hdfstructsutil.o] Error 1 Reproducible: Always root@orca:/root(9)# emerge --info =dev-java/hdf-java-2.6.1 Portage 2.1.8.3 (default/linux/amd64/10.0/desktop, gcc-4.4.3, glibc-2.11-r1, 2.6.33-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-2.6.33-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_W3520_@_2.67GHz-with-gentoo-2.0.1 Timestamp of tree: Wed, 24 Mar 2010 18:30:01 +0000 app-shells/bash: 4.1_p2-r1 dev-java/java-config: 2.1.10 dev-lang/python: 2.6.5, 3.1.2 dev-python/pycrypto: 2.1.0 dev-util/cmake: 2.8.1 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.6.1-r1 sys-apps/sandbox: 2.2 sys-devel/autoconf: 2.13, 2.65 sys-devel/automake: 1.7.9-r2, 1.8.5-r4, 1.9.6-r3, 1.10.3, 1.11.1 sys-devel/binutils: 2.20.1 sys-devel/gcc: 4.4.3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6b virtual/os-headers: 2.6.33 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL dlj-1.1 skype-eula" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -msse4 -mcx16 -msahf -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/eselect/postgresql /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core2 -msse4 -mcx16 -msahf -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch" GENTOO_MIRRORS="http://distfiles.gentoo.org" LC_ALL="C" LDFLAGS="-Wl,-O1" LINGUAS="de fr" MAKEOPTS="-j1" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/var/lib/layman/science /var/lib/layman/x11 /var/lib/layman/zugaina /var/lib/layman/java-overlay /var/lib/layman/sunrise /usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="64bit X Xaw3d a52 aac abiword acl acpi administrator afs alsa amd64 ao aotuv apache2 applet archive arpack asf aspell assistant atlas audacious audiofile automap automount bash-completion berkdb blas blast bluetooth boo boost branding bzip2 c++ cairo cdda cddb cdf cdio cdparanoia cdr cdrkit cg cgi chm cli consolekit corba cracklib crypt css cuda cups curl cxx daap db dbase dbi dbm dbus designer devhelp device-mapper dga dia djvu doc dri ds2490 dts dv dvb dvd dvdr dvi eds elf emacs emboss empathy encode epiphany evo examples exif expat extensions extra extras fam fame ffmpeg fftw firefox fits flac fltk foomaticdb fortran fpx fts3 fuse galago gcj gd gdal gdbm geolocation geos gif gimp ginac git glade glib glitz gml gmp gmtsuppl gnokii gnome gnome-keyring gnome-print gnuplot gnutls gphoto2 gpm grammar graphics graphtft graphviz grass gs gsl gsm gstreamer gtk guile hal harness hddtemp hdf hdf5 hdri hlapi http httpd hvm iconv icq icu id3 ide imagemagick imap innodb inotify ipod ipv6 ithreads jabber jadetex java java5 java6 jbig john jpeg jpeg2k kde kdrive kerberos kexi kpathsea kqemu kvm ladspa lame lapack latex latex3 lcms ldap lensfun libffi libgda libnotify libsamplerate lm_sensors lua lzo mad mail maildir mailwrapper mapnik math matroska mikmod mkl mmx mmxext mng modules mono moonlight motif mozdevelop mozilla mp3 mp4 mpeg mpi mplayer mtp mudflap multilib musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking networkmanager nfs nls nntp nptl nptlonly nsplugin ntfs ntp numarray numeric nvidia obex objc ocaml octave odbc ogdi ogg ole openexr opengl openmp overview pae pam pcre pda pdf perl plotutils plugins png podcast policykit posix postgres postscript ppds pppd preview-latex proj projectx pstricks pulseaudio pymol python python-bindings qemu qhull qt3support qt4 quicktime readline reflection reiserfs rle romio rpc rrdcgi rrdtool samba sasl science sdl secure-delete semantic-desktop server session sip slang slp smbclient smp sms sndfile snmp soup sox speex spell spl sql sqlite sse sse2 ssl startup-notification stlport subtitles subversion suexec svg swig sysfs szip t1lib tcl tcpd tex tex4ht texmacs theora thinkpad threads thunar thunderbird tidy tiff tk tntc tools truetype udev unicode usb userlocales utempter v4l2 virtualbox vorbis wav webdav webdav-serf webkit wmf wxwidgets x264 xattr xcb xemacs xext xine xml xmlreader xmlrpc xorg xpm xulrunner xv xvid xvmc zlib zvbi" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev " KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="de fr" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler ruby websvccommon xml" QEMU_SOFTMMU_TARGETS="i386 ppc ppc64 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby18 jruby" USERLAND="GNU" VIDEO_CARDS="nv nvidia nouveau vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS root@orca:/root(10)# emerge -pqv =dev-java/hdf-java-2.6.1 [ebuild N ] dev-java/hdf-java-2.6.1 USE="doc examples hdf -source"
Created attachment 225151 [details] /var/tmp/portage/dev-java/hdf-java-2.6.1/temp/build.log
Created attachment 225157 [details, diff] adding missing USE dep MAX_VAR_DIMS is defined when sci-libs/hdf is compiled with netcdf support.
But there was an other problem when hdf was compiled with netcdf USE flag, therefore I remove the netcdf USE flag from hdf.
Perhaps sci-libs/gdal does not compile if hdf was compiled with netcdf flag.
I just tried to set again the netcdf flag for hdf. It was not gdal which can't be emerge with hdf and netcdf flag. But dev-lang/gdl fails now to emerge: checking for SDstart in -lmfhdf... yes checking for sd_nccreate in -lmfhdf... no Error! HDF4 needs to be configured with the --disable-netcdf option in order to be used with the original netCDF library (-alt suffixed HDF4 packages in case of Debian) Check the INSTALL file of the HDF4 package for details !!! Please attach the following file when seeking support: !!! /var/tmp/portage/dev-lang/gdl-0.9_rc4/work/gdl-0.9rc4/config.log * ERROR: dev-lang/gdl-0.9_rc4 failed: So, what to do?
I need hdf-java for sci-mathematics/scilab, but I want to use dev-lang/.gdl too. Is there any way to install both packages?
Setting dev-java/hdf-java -hdf seems me to be a workaround.
Please report in original bug. *** This bug has been marked as a duplicate of bug 301049 ***
