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Bug 293628 - Unable to merge kde-base/nepomuk-4.3.3
Summary: Unable to merge kde-base/nepomuk-4.3.3
Status: RESOLVED DUPLICATE of bug 284475
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: [OLD] KDE (show other bugs)
Hardware: All Linux
: High normal (vote)
Assignee: Gentoo KDE team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2009-11-18 14:45 UTC by Detlev Casanova
Modified: 2009-11-18 15:37 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


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Description Detlev Casanova 2009-11-18 14:45:46 UTC
When trying to merge kde-base/nepomuk-4.3.3, I get this error :

[  1%] Generating nie.h, nie.cpp                                                                                                                                                             
346 [main] INFO org.openrdf.query.parser.QueryParserRegistry - Registered service class org.openrdf.query.parser.serql.SeRQLParserFactory                                                    
348 [main] INFO org.openrdf.query.parser.QueryParserRegistry - Registered service class org.openrdf.query.parser.sparql.SPARQLParserFactory                                                  
Writing nepomukservicestub.8 for refentry                                                                                                                                                    
Writing nepomukserver.8 for refentry                                                                                                                                                         
[  2%] Built target nepomuk-manpage-man-nepomukservicestub                                                                                                                                   
[  3%] Generating nfo.h, nfo.cpp                                                                                                                                                             
namespace:  "http://www.semanticdesktop.org/ontologies/2007/01/19/nie#"                                                                                                                      
#                                                                                                                                                                                            
# A fatal error has been detected by the Java Runtime Environment:                                                                                                                           
#                                                                                                                                                                                            
#  SIGSEGV (0xb) at pc=0x00002af951ed0a10, pid=32053, tid=47250298393808                                                                                                                     
#                                                                                                                                                                                            
# JRE version: 6.0_17-b04                                                                                                                                                                    
# Java VM: Java HotSpot(TM) 64-Bit Server VM (14.3-b01 mixed mode linux-amd64 )                                                                                                              
# Problematic frame:                                                                                                                                                                         
# C  [libldap-2.3.so.0+0x20a10]  ldap_free_urllist+0x10                                                                                                                                      
#                                                                                                                                                                                            
# An error report file with more information is saved as:                                                                                                                                    
# /var/tmp/portage/kde-base/nepomuk-4.3.3/work/nepomuk-4.3.3_build/nepomuk/strigibackend/hs_err_pid32053.log                                                                                 
#                                                                                                                                                                                            
# If you would like to submit a bug report, please visit:                                                                                                                                    
#   http://java.sun.com/webapps/bugreport/crash.jsp                                                                                                                                          
# The crash happened outside the Java Virtual Machine in native code.                                                                                                                        
# See problematic frame for where to report the bug.                                                                                                                                         
#                                                                                                                                                                                            
/bin/sh: line 1: 32053 Aborted                 onto2vocabularyclass --name NIE --encoding trig --namespace Nepomuk::Vocabulary --no-visibility-export /var/tmp/portage/kde-base/nepomuk-4.3.3/work/nepomuk-4.3.3/nepomuk/ontologies/nie.trig                                                                                                                                              
make[2]: *** [nepomuk/strigibackend/nie.h] Error 134                                                                                                                                         
make[2]: *** Waiting for unfinished jobs....
[...]

I tried re-emerging soprano with(out) java support, removing all java VM and reinstalling sun-jdk 1.6.0.17

Nothing works....

Am I missing something here ?
Comment 1 Detlev Casanova 2009-11-18 14:46:50 UTC
emerge --info :
Portage 2.1.7.5 (default/linux/amd64/10.0, gcc-4.3.4, glibc-2.9_p20081201-r2, 2.6.29.6 x86_64)
=================================================================
System uname: Linux-2.6.29.6-x86_64-Intel-R-_Core-TM-2_Duo_CPU_T8300_@_2.40GHz-with-gentoo-1.12.13
Timestamp of tree: Wed, 18 Nov 2009 13:30:24 +0000
distcc 3.1 x86_64-pc-linux-gnu [disabled]
ccache version 2.4 [disabled]
app-shells/bash:     4.0_p28
dev-java/java-config: 1.3.7-r1, 2.1.9-r1
dev-lang/python:     2.4.4-r13, 2.5.4-r3, 2.6.2-r1
dev-python/pycrypto: 2.0.1-r8
dev-util/ccache:     2.4-r7
dev-util/cmake:      2.8.0
sys-apps/baselayout: 1.12.13
sys-apps/sandbox:    2.2
sys-devel/autoconf:  2.13, 2.63-r1
sys-devel/automake:  1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2
sys-devel/binutils:  2.18-r3
sys-devel/gcc-config: 1.4.1
sys-devel/libtool:   2.2.6a
virtual/os-headers:  2.6.27-r2
ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/4.2/env /usr/kde/4.2/share/config /usr/kde/4.2/shutdown /usr/share/X11/xkb /usr/share/config /var/lib/hsqldb"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/udev/rules.d"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="assume-digests distlocks fixpackages news parallel-fetch protect-owned sandbox sfperms strict unmerge-logs unmerge-orphans userfetch"
GENTOO_MIRRORS="ftp://ftp.belnet.be/mirror/rsync.gentoo.org/gentoo/ ftp://gentoo.imj.fr/pub/gentoo/ "
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="X acl acpi aiglx alsa amd64 apache2 asf autoipd avahi berkdb bluetooth branding bzip2 cairo cli cracklib crypt cups curl dbus dell dri dv dvd dvdread fat ffmpeg firefox flac fortran gdbm gif glitz gphoto2 gpm gstreamer hal iconv ieee1394 imagemagick imlib ipv6 java jingle jpeg kde kpathsea laptop latin1 ldap lm_sensors melt mjpeg mmx modules mp3 mudflap multilib musicbrainz mysql nas ncurses network nls nptl nptlonly nsplugin ntfs ogg openexr opengl openmp pcmcia pcre pdf perl php png postgres povray pppd python qt3support qt4 quicktime rdesktop readline reflection reiserfs samba scanner sdl session speex spell spl sqlite sqlite3 sse sse2 ssl svg sysfs tcpd tetex theora tiff unicode usb utempter v4l v4l2 vcd vim-syntax vorbis wifi wlm xcb xcomposite xine xml xorg xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev mouse synaptics keyboard" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_CARDS="intel"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Comment 2 Paweł Hajdan, Jr. (RETIRED) gentoo-dev 2009-11-18 15:28:34 UTC
Looks like a dupe of bug 284475
Comment 3 Tomáš Chvátal (RETIRED) gentoo-dev 2009-11-18 15:37:43 UTC

*** This bug has been marked as a duplicate of bug 284475 ***