I recently updated my quite old hardened gentoo box. The update process included glibc upgrade to 2.9_p20081201-r2! Everything went fine except I couldn't manage to compile glib. Reproducible: Always Actual Results: .... checking for thread implementation... posix checking thread related cflags... -D_REENTRANT checking for pthread_create/pthread_join... no checking for pthread_create/pthread_join in -lpthread... no checking for pthread_create/pthread_join in -lpthread32... no checking for pthread_create/pthread_join in -lpthreads... no checking for pthread_create/pthread_join in -lthread... no checking for pthread_create/pthread_join in -ldce... no configure: error: I can't find the libraries for the thread implementation posix. Please choose another thread implementation or provide information on your thread implementation. You can also run 'configure --disable-threads' to compile without thread support. Expected Results: checking for thread implementation... posix checking thread related cflags... -pthread checking for sched_get_priority_min... yes checking thread related libraries... -pthread emerge --info Portage 2.1.6.13 (hardened/x86, gcc-3.4.6, glibc-2.9_p20081201-r2, 2.6.20-hardened-r6 i686) ================================================================= System uname: Linux-2.6.20-hardened-r6-i686-Intel-R-_Pentium-R-_4_CPU_3.06GHz-with-glibc2.3.2 Timestamp of tree: Wed, 01 Jul 2009 00:45:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p39 dev-lang/python: 2.5.4-r3 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.63 sys-devel/automake: 1.5, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium4 -O2 -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/udev/rules.d" CXXFLAGS="-march=pentium4 -O2 -pipe -fomit-frame-pointer" DISTDIR="/_gentoo_portage/distfiles" FEATURES="buildpkg ccache distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://gentoo.inf.elte.hu" LC_ALL="hu_HU.UTF-8" LDFLAGS="" LINGUAS="hu" MAKEOPTS="-j3" PKGDIR="/_gentoo_portage/packages/pentium4" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/_gentoo_portage/tmp" PORTDIR="/_gentoo_portage/portage" PORTDIR_OVERLAY="/_gentoo_portage/overlay" SYNC="rsync://192.168.253.1/gentoo-portage" USE="acpi berkdb bzip2 cracklib crypt dbus hal hardened midi mmx ncurses nls nptl nptlonly pam pic readline slang sse sse2 ssl tcpd unicode urandom x86 xorg zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="hu" USERLAND="GNU" VIDEO_CARDS="vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LANG, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Created attachment 196355 [details] build log
ls -l /lib/libpthread* -rwxr-xr-x 1 root root 128446 júl 2 10.50 /lib/libpthread-2.9.so lrwxrwxrwx 1 root root 17 júl 2 10.51 /lib/libpthread.so.0 -> libpthread-2.9.so
Could you attach the config.log too, please ?
(In reply to comment #3) > Could you attach the config.log too, please ? > Shortly after I got this error, I had to reinstall that machine. So I haven't got the logs anymore. Anyway I'm still intrested in what could be the cause of this error.
I ran into the same bug. Portage 2.1.6.13 (hardened/x86, gcc-3.4.6, glibc-2.9_p20081201-r2, 2.6.11-hardened-r15 i686) ================================================================= System uname: Linux-2.6.11-hardened-r15-i686-Intel-R-_Pentium-R-_4_CPU_3.00GHz-with-gentoo-1.12.11.1 Timestamp of tree: Mon, 31 Aug 2009 07:45:01 +0000 app-shells/bash: 3.2_p39 dev-lang/python: 2.4.4-r13, 2.5.2-r7, 2.6.2-r1 dev-python/pycrypto: 2.0.1-r6 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.6-r2 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.27-r2 ACCEPT_KEYWORDS="x86" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_alias authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="prefork" ARCH="x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium4 -O2 -pipe" CHOST="i686-pc-linux-gnu" CLEAN_DELAY="5" COLLISION_IGNORE="/lib/modules" CONFIG_PROTECT="/etc /var/bind" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/udev/rules.d" CVS_RSH="ssh" CXXFLAGS="-march=pentium4 -O2 -pipe" DISTDIR="/usr/portage/distfiles" EDITOR="vim" ELIBC="glibc" EMERGE_DEFAULT_OPTS="--verbose" EMERGE_WARNING_DELAY="10" FEATURES="buildpkg distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" FETCHCOMMAND="/usr/bin/wget -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" GCC_SPECS="" GENTOO_MIRRORS="http://gentoo.inf.elte.hu/ http://gentoo.inode.at/ http://gentoo.osuosl.org/" GIT_AUTHOR_EMAIL="veszig@done.hu" GIT_AUTHOR_NAME="Gabor Veszi" GIT_COMMITTER_EMAIL="veszig@done.hu" GIT_COMMITTER_NAME="Gabor Veszi" HISTCONTROL="erasedups" HISTSIZE="10000" HOME="/root" INFOPATH="/usr/share/info:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/info:/usr/share/gcc-data/i686-pc-linux-gnu/3.4.6/info" INPUT_DEVICES="mouse keyboard evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LC_CTYPE="hu_HU" LDFLAGS="-Wl,-O1" LESS="-R -M --shift 5" LESSOPEN="|/usr/bin/lesspipe.sh %s" LOGNAME="root" LS_COLORS="rs=0:di=01;34:ln=01;36:hl=44;37:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:" MAKEOPTS="-j3" MANPATH="/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/i686-pc-linux-gnu/2.18/man:/usr/share/gcc-data/i686-pc-linux-gnu/3.4.6/man" NETBEANS="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" PAGER="/usr/bin/less" PATH="/root/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/3.4.6" PKGDIR="/usr/portage/packages" PORTAGE_ARCHLIST="ppc x86-openbsd ppc-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 x86-macos x64-openbsd ia64-hpux hppa x86-netbsd amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd" PORTAGE_BINHOST="http://tinderbox.dev.gentoo.org/hardened/x86/" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib/portage/bin" PORTAGE_COMPRESS_EXCLUDE_SUFFIXES="css gif htm[l]? jp[e]?g js pdf png" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ELOG_CLASSES="warn error log" PORTAGE_ELOG_MAILFROM="portage@michael.szentignac.hu" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="emerge-log@ezit.hu mail.ezit.hu" PORTAGE_ELOG_SYSTEM="save mail_summary" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_FETCH_RESUME_MIN_SIZE="350K" PORTAGE_GID="250" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib/portage/pym" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="3" PORTAGE_TMPDIR="/var/tmp" PORTAGE_VERBOSE="1" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" PORT_LOGDIR="/var/log/portage" PROFILE_ONLY_VARIABLES="ARCH ELIBC KERNEL USERLAND" PS1="\[\033[00;37m\][\[\033[01;31m\]\h\[\033[00;37m\]:\w] \[\033[01;30m\]$ \[\033[00m\]" PWD="/root" RESUMECOMMAND="/usr/bin/wget -c -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" ROOT="/" ROOTPATH="/opt/bin:/usr/i686-pc-linux-gnu/gcc-bin/3.4.6" RPMDIR="/usr/portage/rpm" RUBYOPT="-rauto_gem" SHELL="/bin/bash" SHLVL="1" STAGE1_USE="hardened pic" SYNC="rsync://rsync.at.gentoo.org/gentoo-portage" TERM="xterm-color" USE="acpi apache2 bash-completion berkdb bzip2 cracklib crypt dbm fam gdbm gnutls hardened idn libwww logrotate mmx ncurses nls nptl nptlonly odbc pam pcre perl pic pie posix readline ruby sasl screen snmp sse sse2 ssl sysvipc tcpd threads unicode urandom vhosts vim-syntax x86 xml zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_alias authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" APACHE2_MPMS="prefork" ELIBC="glibc" INPUT_DEVICES="mouse keyboard evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_CARDS="apm ark chips cirrus cyrix dummy fbdev glint i128 i740 imstt intel mach64 mga neomagic nsc nv r128 radeon rendition s3 s3virge savage siliconmotion sis sisusb tdfx tga trident tseng v4l vesa vga via vmware voodoo" USER="root" USERLAND="GNU" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VIDEO_CARDS="apm ark chips cirrus cyrix dummy fbdev glint i128 i740 imstt intel mach64 mga neomagic nsc nv r128 radeon rendition s3 s3virge savage siliconmotion sis sisusb tdfx tga trident tseng v4l vesa vga via vmware voodoo" _="/usr/bin/emerge"
Created attachment 202843 [details] build log
Created attachment 202844 [details] config log
The config.log is full of "undefined reference to xxx" and it just can't seem to find any posix implementation of threads. CCing hardened people, maybe they can shed some light here.
I upgraded to sys-kernel/hardened-sources-2.6.28-r9 and the problem went away.
Ok, then we'll let hardened decide on what to do with this bug. Feel free to re-CC us if you need our input.
Linux XXXX 2.6.14-hardened-r5 #2 SMP Tue Feb 14 06:40:46 UTC 2006 i686 Intel(R) Xeon(TM) CPU 2.40GHz GenuineIntel GNU/Linux Is there any solution to this old bug other than upgrading kernel?
This is probably obsolete now :/
