Compiling netbeans fails due to this error. Switching to istack-commons-runtime-2007* works fine. Reproducible: Couldn't Reproduce Steps to Reproduce: 1. emerged istack-commons-runtime-20070122-r1 2. emerge jaxb 3. emerge istack-commons-runtime-20090620 After that, the error was gone, so I can't provide more information emerge --info: Portage 2.1.6.13 (default/linux/x86/2008.0/desktop, gcc-4.3.3, glibc-2.10.1-r0, 2.6.30 i686) ================================================================= System uname: Linux-2.6.30-i686-Intel-R-_Core-TM-2_Duo_CPU_T9500_@_2.60GHz-with-gentoo-2.0.1 Timestamp of tree: Mon, 22 Jun 2009 07:30:02 +0000 app-shells/bash: 4.0_p24 dev-java/java-config: 1.3.7-r1, 2.1.8-r1 dev-lang/python: 2.5.4-r2, 2.6.2-r1 dev-python/pycrypto: 2.0.1-r8 dev-util/cmake: 2.6.4 sys-apps/baselayout: 2.0.1 sys-apps/openrc: 0.4.3-r2 sys-apps/sandbox: 2.0 sys-devel/autoconf: 2.13, 2.63-r1 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.2, 1.11 sys-devel/binutils: 2.19.1-r1 sys-devel/gcc-config: 1.4.1 sys-devel/libtool: 2.2.6a virtual/os-headers: 2.6.29 ACCEPT_KEYWORDS="x86 ~x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=native -O2 -fomit-frame-pointer -pipe -w -g0" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/lib/hsqldb" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=native -O2 -fomit-frame-pointer -pipe -w -g0" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks fixpackages parallel-fetch protect-owned sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://distfiles.gentoo.org http://distro.ibiblio.org/pub/linux/distributions/gentoo" LANG="en_US.utf-8" LDFLAGS="-Wl,-O1 -Wl,--sort-common" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage-local" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X acpi alsa avahi avi bash-completion berkdb bindist bluetooth branding bzip2 cairo cdr cli consolekit cracklib crypt cscope ctype cups curl cvs dbus dia dnotify dot dri dvd dvdr dvdread eds emboss encode esd evo fam fftw firefox fontconfig fontforge fortran gcj gdbm gif glibc-omitfp gmp gnome graphviz gtk gtk2 hal iconv imagemagick imap inotify ipv6 isdnlog java jpeg jpeg2k kdeenablefinal kdehiddenvisibility kdexdelta lapack latex libffi libnotify mad maildir mdnsresponder-compat midi mmap mmx mmxext mp3 mpeg mudflap ncurses no-old-linux nomalloccheck nowin nptl nptlonly ogg opengl openmp pam pch pcre pdf perl png posix ppds pppd python qt3 qt3support qt4 quicktime readline reflection samba sdl session source spamassassin sparse spell spl sqlite3 sse sse2 ssl startup-notification subversion svg sysfs tcpd threads tiff truetype type1 unicode usb valgrind vim-pager vim-syntax vim-with-x vorbis win32codecs x86 xanim xface xft xinerama xml xorg xscreensaver xulrunner xv xvid zeroconf zip zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" NETBEANS_MODULES="apisupport harness ide java nb websvccommon enterprise" USERLAND="GNU" VIDEO_CARDS="nvidia" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, FFLAGS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Reproducible: Always After reproducing your bug, I followed your instructions about downgrading to istack-commons-runtime-2007* and compiled fine. The issue here is a simple path problem. istack-commons-runtime-2007* installs the jar in /usr/share/istack-commons-runtime istack-commons-runtime-20090620 puts its data in /usr/share/istack-commons-runtime-1.1. To workaround, you can symlink /usr/share/istack-commons-runtime-1.1 -> /usr/share/istack-commons-runtime and then rebuild jaxb. You could mv it but I don't know what that would do during upgrades / maint.
There's now proper slot deps in everything using istack-commons-runtime in ~arch so for them it's now fixed. Waiting for bug #275204 to be fixed so people mixing unstable and stable get the fix and will then mark this as resolved.
dev-java/jax-ws-tools-2.0.1-r1 is stable on all archs for quite some time. Closing.
