262081 – sci-chemistry/openbabel-2.0.2 fails to compile w/gcc-4.3.x

Bug 262081 - sci-chemistry/openbabel-2.0.2 fails to compile w/gcc-4.3.x

Summary: sci-chemistry/openbabel-2.0.2 fails to compile w/gcc-4.3.x

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	New packages (show other bugs)
Hardware:	All Linux

Importance:	High normal (vote)
Assignee:	Gentoo Chemistry-Related Packages

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:	gcc-4.3
	Show dependency tree

Reported:	2009-03-11 05:36 UTC by Maciej Mrozowski
Modified:	2010-04-21 14:01 UTC (History)
CC List:	2 users (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
compilation fix (openbabel-2.0.2-gcc-4.3.patch,2.51 KB, patch) 2009-03-11 05:53 UTC, Maciej Mrozowski	Details \| Diff
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.

Description Maciej Mrozowski gentoo-dev

2009-03-11 05:36:33 UTC

gcc-4.3.3, glibc-2.9_p20081201-r2

multiple build failures with missing strncpy, strlen, getenv, memcpy, strncasecmp, missing include file <typinfo>

I guess it's too old to be worthy patching but as it's marked stable...

Comment 1 Maciej Mrozowski gentoo-dev

2009-03-11 05:53:51 UTC

Created attachment 184652 [details, diff]
compilation fix

Comment 2 Peter Alfredsen (RETIRED) gentoo-dev

2009-03-11 23:24:00 UTC

This looks more generally to be a gcc-4.3 issue if that patch fixes it.

Comment 3 Marcus D. Hanwell (RETIRED) gentoo-dev

2009-07-20 16:06:38 UTC

Sorry, missed this bug. We should target openbabel-2.2.1 for stabilization. I will look into potential issues. Ideally 2.0.2, 2.1.1 and 2.2.0 should be removed from the tree.

Comment 4 Diego Elio Pettenò (RETIRED) gentoo-dev

2009-08-09 22:13:35 UTC

Given we haven't got 4.3 in stable yet this should be count as fixed.

Comment 5 Rafal Rzepecki 2009-10-09 01:42:53 UTC

Please reopen.

gcc-4.3.2 is now stable, which breaks openbabel on stable systems.
I can confirm that the patch fixes it.

Comment 6 Maciej Mrozowski gentoo-dev

2009-10-09 14:00:42 UTC

Reopening, please close when either patch is applied or unaffected version stabilized. Thanks.

Comment 7 Samuli Suominen (RETIRED) gentoo-dev

2010-04-21 14:01:55 UTC

See bug 288413. Current stable is 2.2.1, and I'm pretty sure it compiled with GCC 4.3.4 when I marked it stable on amd64.

So closing this...