Detected file collision(s): /usr/bin/extract /usr/bin/htmlclean Searching all installed packages for file collisions... Press Ctrl-C to Stop dev-perl/HTML-Clean-0.8-r1 /usr/bin/htmlclean app-crypt/pkcrack-1.2.2 /usr/bin/extract
Have fun, media-libs/libextractor also installs /usr/bin/extract!
*** Bug 247891 has been marked as a duplicate of this bug. ***
Detected file collision(s): /usr/bin/extract Searching all installed packages for file collisions... Press Ctrl-C to Stop app-crypt/pkcrack-1.2.2 /usr/bin/extract Package 'sci-biology/glimmer-3.02' NOT merged due to file collisions. If necessary, refer to your elog messages for the whole content of the above message.
*** Bug 253612 has been marked as a duplicate of this bug. ***
Committed workaround: sci-biology/glimmer-3.02-r1 blocks app-crypt/pkcrack and media-libs/libextractor. Thanks for reporting. Please mention package name in summary when reporting.
from bug #253612: sci-chemistry/pdb-extract-1.700 and app-text/html-xml-utils also install /usr/bin/extract weaver: adding blockers can only be a temporary workaround. you would also need to block pdb-extract and html-xml-utils and any other package using that name. just avoid it...
Half of this was fixed in bug 218146 The style of these bugs doesn't help to see which part was fixed. With >=app-text/html-xml-utils-5.3 the binaries were renamed. /usr/bin/htmlclean is installed by dev-perl/HTML-Clean only. ***** So this bug is now about the packages installing /usr/bin/extract: media-libs/libextractor app-crypt/pkcrack sci-chemistry/pdb-extract sci-biology/glimmer
*** Bug 262208 has been marked as a duplicate of this bug. ***
Repost my comment from bug 262208 three packages install /usr/bin/extract sci-chemistry/pdb-extract media-libs/libextractor app-crypt/pkcrack To fix this I would suggest to rename after following scheme app-crypt/pkcrack extract --> pkextract media-libs/libextractor extract --> libextract sci-chemistry/pdb-extract can keep its extract --> Reason: 1. it already contains pdb_extract as binary, so things like pdb-extract aren't good 2. it is often used by other programms and third party scripts
So this bug should be solved by: - net-p2p - crypto - sci-biology - sci-chemistry Can you rename /usr/bin/extract in your package?
(In reply to comment #10) > So this bug should be solved by: > - net-p2p > - crypto > - sci-biology > - sci-chemistry > > Can you rename /usr/bin/extract in your package? > Is there really no progress on this since 2009? I just bumped into this conflict...
*** Bug 426876 has been marked as a duplicate of this bug. ***
(In reply to comment #12) > *** Bug 426876 has been marked as a duplicate of this bug. *** ^ media-sound/csound too, CCing radhermit@ so he can rename the binary to something else like everyone else should do too -> libextractor as a popular library is keeping extract, and others are renaming
blockers in place now: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/libextractor/libextractor-0.6.3-r1.ebuild?r1=1.1&r2=1.2 once you are done with the renaming, please adjust the blocker in libextractor's ebuild accordingly net-p2p@ is out :)
Fixed in csound, extract -> csound_extract.
fixed in pkcrack: extract -> pkcrack-extract pkcrack-1.2.2-r1
(In reply to comment #16) > fixed in pkcrack: extract -> pkcrack-extract > > pkcrack-1.2.2-r1 "once you are done with the renaming, please adjust the blocker in libextractor's ebuild accordingly" ...please. Thanks.
(In reply to comment #17) > (In reply to comment #16) > > fixed in pkcrack: extract -> pkcrack-extract > > > > pkcrack-1.2.2-r1 > > "once you are done with the renaming, please adjust the blocker in > libextractor's ebuild accordingly" > > ...please. > > Thanks. libextractor-1.0.1 is still blocking pkcrack, but does not need to since pkcrack-1.2.2-r1. Please remove the block from libextractor. Thanks.
Collecting the packages mentioned, as well as using the following command e-file extract | grep '/usr/bin/extract' -B2 we get app-crypt/pkcrack media-libs/libextractor media-sound/csound sci-biology/glimmer sci-chemistry/azara sci-chemistry/pdb-extract and after emerging we see that some of these can't be installed together, we get app-crypt/pkcrack media-libs/libextractor sci-biology/glimmer sci-chemistry/pdb-extract that block each other correctly; and when we re-emerge the remainder, we get 1) a build failure for sci-chemistry/azara, but checking the ebuild it seems to have this correct: for bin in *; do newbin ${bin} ${bin}-${PN} done 2) to see that csound_extract is still in place; therefore this bug has been fixed. > libextractor-1.0.1 is still blocking pkcrack, but does not need to since pkcrack-1.2.2-r1. Please remove the block from libextractor. Thank you for reporting this, done; made it less strict. + 31 Mar 2014; Tom Wijsman <TomWij@gentoo.org> libextractor-1.0.1.ebuild: + [QA] Make pkcrack blocker less strict as newer revision moves the file away, + for bug #247394. You might need to re-emerge libextractor to unblock it.
(In reply to Samuli Suominen from comment #14) > once you are done with the renaming, please adjust the blocker in > libextractor's ebuild accordingly Hmm, right; thanks for pinging, there are some renames / blocker changes pending. Will re-evaluate this later...
Patch for sci-biology/glimmer-3.02b landed in science overlay (should be backwards compatible).
+*glimmer-3.02b (26 May 2015) +*glimmer-3.02-r3 (26 May 2015) + + 26 May 2015; Justin Lecher <jlec@gentoo.org> + +files/glimmer-3.02b-jobserver-fix.patch, +files/glimmer-3.02b-ldflags.patch, + +files/glimmer-3.02b-rename_extract.patch, +glimmer-3.02-r3.ebuild, + +glimmer-3.02b.ebuild, -glimmer-3.02-r1.ebuild: + Version Bump and patch for file collision, thanks Martin Mokrejs for the fix, + bug #247394; Respect CXX, CXXFLAGS and LDFLAGS +
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d1b1bca53fca7815fba48028f5c1eaa746b0908e commit d1b1bca53fca7815fba48028f5c1eaa746b0908e Author: David Seifert <soap@gentoo.org> AuthorDate: 2023-03-18 16:43:05 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2023-03-18 16:43:05 +0000 media-libs/libextractor: treeclean Bug: https://bugs.gentoo.org/247394 Closes: https://bugs.gentoo.org/767247 Closes: https://bugs.gentoo.org/834382 Signed-off-by: David Seifert <soap@gentoo.org> media-libs/libextractor/Manifest | 1 - .../files/libextractor-1.8-exiv2-0.27.patch | 127 --------------------- .../files/libextractor-1.9-CVE-2019-15531.patch | 15 --- media-libs/libextractor/libextractor-1.9-r5.ebuild | 118 ------------------- media-libs/libextractor/metadata.xml | 13 --- profiles/package.mask | 12 -- 6 files changed, 286 deletions(-)
