The detect_C89_integers function generates a Bus error here: @1132 --- DETECT_I(short, SHORT, d_g[nd_g]); nd_g++; (This is both with and without the patch for Bug 195717) This error means that something is misaligned for the test, but I haven't chased it down. Whatever it is, it should be "obvious" to upstream. Here's the obligatory 'emerge --info': =========================================== fmccor@polylepis Packages [243]% emerge --info Portage 2.2_pre5 (default-linux/sparc/sparc64/2007.0, gcc-4.1.2, glibc-2.6.1-r0, 2.6.25-rc7-SB1000 sparc64) ================================================================= System uname: 2.6.25-rc7-SB1000 sparc64 sun4u Timestamp of tree: Fri, 18 Apr 2008 11:30:01 +0000 distcc 2.18.3 sparc-unknown-linux-gnu (protocols 1 and 2) (default port 3632) [disabled] ccache version 2.4 [enabled] app-shells/bash: 3.2_p17-r1 dev-java/java-config: 1.3.7, 2.0.30 dev-lang/python: 2.4.4-r9 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 dev-util/confcache: 0.4.2-r1 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ABI="sparc32" ACCEPT_KEYWORDS="sparc" ALSA_CARDS="ca0106 cmipci ens1370 ens1371" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ARCH="sparc" AUTOCLEAN="yes" CBUILD="sparc-unknown-linux-gnu" CDEFINE_sparc32="!__arch64__" CFLAGS="-O2 -pipe -mcpu=ultrasparc3" CFLAGS_sparc32="-m32" CHOST="sparc-unknown-linux-gnu" CHOST_sparc32="sparc-unknown-linux-gnu" CHOST_sparc64="sparc64-unknown-linux-gnu" CLASSPATH="." CLEAN_DELAY="5" CONFIG_PROTECT="/etc /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config /var/spool/torque" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/java-config/vms/ /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CPATH="/usr/include/libffi" CTARGETS_BINUTILS="sparc-unknown-linux-gnu sparc64-unknown-linux-gnu" CTARGET_sparc32="sparc-unknown-linux-gnu" CVS_RSH="ssh" CXXFLAGS="-O2 -pipe -mcpu=ultrasparc3" DCCC_PATH="/usr/lib/distcc/bin" DD="/jaz/portage/distfiles" DEBUG_CFLAGS="-O2 -mcpu=ultrasparc3 -pipe -g -D__GLX_ALIGN64" DEBUG_CXXFLAGS="-O1 -mcpu=ultrasparc3 -pipe -g -fno-inline-functions -D__GLX_ALIGN64" DEBUG_FFLAGS="-O2 -pipe -mcpu=ultrasparc3 -g" DEFAULT_ABI="sparc32" DISPLAY="liasis:0.0" DISTCC_DIR="/home0/ferris/.distcc" DISTCC_HOSTS="localhost/2 antaresia/2" DISTCC_LOG="" DISTCC_PATH="/usr/lib/distcc/bin" DISTCC_VERBOSE="0" DISTDIR="/usr/portage/distfiles" ECHANGELOG_EDITOR="/usr/bin/vim" EDITOR="/usr/bin/vim" ELIBC="glibc" EMERGE_DEFAULT_OPTS="--verbose" EMERGE_WARNING_DELAY="10" FEATURES="ccache cvs distlocks metadata-transfer parallel-fetch preserve-libs sandbox sfperms strict unmerge-orphans userfetch" FETCHCOMMAND="/usr/bin/wget -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" FFLAGS="-O2 -pipe -mcpu=ultrasparc3" FLTK_DOCDIR="/usr/share/doc/fltk-1.1.7-r3/html" FREECIV_DATADIR="/home0/freeciv/share/freeciv" FREECIV_DIR="/home0/freeciv/share/freeciv" GCC_SPECS="" GDK_USE_XFT="1" GENTOO_MIRRORS="ftp://gentoo.mirrors.tds.net/gentoo http://gentoo.cites.uiuc.edu/pub/gentoo/ http://194.117.143.70 ftp://194.117.143.71/mirrors/gentoo http://194.117.143.69" GRASS_LD_LIBRARY_PATH="/usr/grass62/lib" GUILE_LOAD_PATH="/usr/share/guile/1.8" HOME="/homes/home0/ferris" ICEPY_HOME="/cache/IcePy-3.0.0/python" ICE_HOME="/cache/Ice-3.0.0" ICE_VERSION="3.0.0" INFOPATH="/usr/share/info:/usr/share/binutils-data/sparc-unknown-linux-gnu/2.18/info:/usr/share/gcc-data/sparc-unknown-linux-gnu/4.1.2/info:/opt/xmingw/info:/usr/share/info/emacs-22:/homes/cache/info" INPUT_DEVICES="evdev keyboard mouse" JAVAC="/usr/bin/jikes" JDK_HOME="" KDEDIRS="/usr:/usr/local:/usr/kde/3.5" KERNEL="linux" KERNEL_ABI="sparc64" LADSPA_PATH="/usr/lib/ladspa" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LC_ALL="en_US.utf8" LDFLAGS_sparc32="-m elf32_sparc" LDFLAGS_sparc64="-m elf64_sparc" LESS="-R -M --shift 5" LESSCHARSET="utf-8" LESSOPEN="|lesspipe.sh %s" LIBDIR_sparc32="lib" LOGNAME="fmccor" LS_COLORS="no=00:fi=00:di=01;34:ln=01;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.gz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:" MAIL="/var/mail/fmccor" MAKEOPTS="-j2" MANPATH="/usr/local/share/man:/usr/share/man:/usr/share/binutils-data/sparc-unknown-linux-gnu/2.18/man:/usr/share/gcc-data/sparc-unknown-linux-gnu/4.1.2/man:/opt/xmingw/man:/etc/java-config/system-vm/man/:/usr/lib/php5/man/:/usr/kde/3.5/share/man:/usr/qt/3/doc/man:/opt/opera/share/man:/homes/cache/man" MULTILIB_ABIS="sparc32" NIGHTLY="http://www.open-mpi.org/nightly/v0.9/" NS="/home1/PROJECTS/SIMULATION/ALL-IN-ONE/NS28/bin/ns" NSDIR="/home1/PROJECTS/SIMULATION/ALL-IN-ONE/NS28/ns-2.28" OLDPWD="/homes/home0/ferris/Packages/SIMULA" OMNIORB_CONFIG="/etc/omniorb/omniORB.cfg" OMPI="/home1/PROJECTS/OPEN-MPI" OPENGL_PROFILE="xorg-x11" PAGER="/usr/bin/less" PATH=".:/usr/local/lib/sablevm/bin:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/sparc-unknown-linux-gnu/gcc-bin/4.1.2:/usr/sparc-unknown-linux-gnu/sparc64-unknown-linux-gnu/gcc-bin/4.1.2:/opt/xmingw/bin:/usr/kde/3.5/bin:/usr/qt/3/bin:/usr/kde/3.3/bin:/opt/firebird/bin:/usr/games/bin:/usr/share/omniORB/bin/scripts:/usr/sbin:/sbin" PBS_SERVER_HOME="/var/spool/torque" PD="/jaz/portage/packages" PKGDIR="/usr/portage/packages" PKG_CONFIG_PATH="/usr/qt/3/lib/pkgconfig" PORTAGE_ARCHLIST="ppc s390 amd64 x86 ppc64 x86-fbsd m68k arm sparc sh mips ia64 alpha hppa sparc-fbsd" PORTAGE_BINHOST_CHUNKSIZE="3000" PORTAGE_BIN_PATH="/usr/lib/portage/bin" PORTAGE_CONFIGROOT="/" PORTAGE_DEBUG="0" PORTAGE_DEPCACHEDIR="/var/cache/edb/dep" PORTAGE_ECLASS_WARNING_ENABLE="0" PORTAGE_ELOG_CLASSES="warn error log" PORTAGE_ELOG_MAILFROM="portage@localhost" PORTAGE_ELOG_MAILSUBJECT="[portage] ebuild log for ${PACKAGE} on ${HOST}" PORTAGE_ELOG_MAILURI="root" PORTAGE_ELOG_SYSTEM="save" PORTAGE_FETCH_CHECKSUM_TRY_MIRRORS="5" PORTAGE_GID="250" PORTAGE_INST_GID="0" PORTAGE_INST_UID="0" PORTAGE_PYM_PATH="/usr/lib/portage/pym" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_RSYNC_RETRIES="3" PORTAGE_TMPDIR="/var/tmp" PORTAGE_WORKDIR_MODE="0700" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" PRELINK_PATH_MASK="/usr/lib/gstreamer-0.10:/usr/lib/gstreamer-0.8 /usr/lib/gstreamer-0.8" PROFILE_ARCH="sparc64" PS1="\[\033[01;32m\]\u@\h \[\033[01;31m\]\W [\#]% \[\033[00m\]" PS2="> " PWD="/homes/home0/ferris/Packages" PYTHONPATH=":/cache/IcePy-3.0.0/python:/cache/IcePy-3.0.0/python" QMAKESPEC="linux-g++" QTDIR="/usr/qt/3" REMOTEHOST="liasis.inforead.com" RESUMECOMMAND="/usr/bin/wget -c -t 5 -T 60 --passive-ftp -O "${DISTDIR}/${FILE}" "${URI}"" ROOT="/" ROOTPATH="/opt/bin:/usr/sparc-unknown-linux-gnu/gcc-bin/4.1.2:/usr/sparc-unknown-linux-gnu/sparc64-unknown-linux-gnu/gcc-bin/4.1.2:/opt/xmingw/bin:/usr/kde/3.5/sbin:/usr/kde/3.5/bin:/usr/qt/3/bin:/usr/kde/3.3/sbin:/usr/kde/3.3/bin:/opt/firebird/bin:/homes/cache/bin" RPMDIR="/usr/portage/rpm" RUBYOPT="-rubygems" R_HOME="/usr/lib/R" SCHEME_LIBRARY_PATH="/usr/share/slib/" SGML_CATALOG_FILES="/etc/sgml/sgml-ent.cat:/etc/sgml/sgml-docbook.cat:/etc/sgml/openjade-1.3.2.cat:/etc/sgml/sgml-docbook-4.1.cat:/etc/sgml/sgml-docbook-4.0.cat:/etc/sgml/dsssl-docbook-stylesheets.cat:/etc/sgml/sgml-docbook-3.0.cat:/etc/sgml/sgml-docbook-3.1.cat:/etc/sgml/xml-simple-docbook-4.1.2.4.cat:/etc/sgml/xml-simple-docbook-1.0.cat:/etc/sgml/xml-docbook-4.4.cat:/etc/sgml/xml-docbook-4.1.2.cat:/etc/sgml/sgml-docbook-4.2.cat:/etc/sgml/sgml-lite.cat" SHELL="/bin/bash" SHLVL="2" SSH_AGENT_PID="7377" SSH_AUTH_SOCK="/tmp/ssh-MiPVbP7376/agent.7376" SSH_CLIENT="192.168.1.213 45508 22" SSH_CONNECTION="192.168.1.213 45508 192.168.1.212 22" STAGE1_USE="nptl nptlonly unicode" SYNC="rsync://rsync.gentoo.org/gentoo-portage" TERM="xterm" TEXINPUTS="/usr/lib/ocaml/ocamldoc:" TMP="/tmp/.private/fmccor" TMPDIR="/tmp/.private/fmccor" USE="X Xaw3d alsa bzip2 cairo cli cracklib crypt cscope cups dri examples fortran gdbm gif glx gpm graphviz iconv idea isdnlog jpeg kerberos latex lzw-tiff midi mudflap mysql nls nptl nptlonly ogg opengl openmp pcre pdf perl png ppds pppd python reflection ruby ruby18 session sparc speex spl sqlite ssl stroke tcl tcltk tetex tex tiff tk truetype unicode vim-syntax vorbis xcb xetex xorg zlib" ALSA_CARDS="ca0106 cmipci ens1370 ens1371" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" USERLAND="GNU" VIDEO_CARDS="dummy fbdev sunffb" USER="fmccor" USERLAND="GNU" USE_EXPAND="ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS CROSSCOMPILE_OPTS DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS USERLAND VIDEO_CARDS" USE_EXPAND_HIDDEN="CROSSCOMPILE_OPTS ELIBC KERNEL USERLAND" USE_ORDER="env:pkg:conf:defaults:pkginternal:env.d" VIDEO_CARDS="dummy fbdev sunffb" WANT_AUTOCONF="2.5" WANT_MP="true" WINDOWID="56623128" WINDOWMANAGER="/usr/bin/fvwm" XDG_DATA_DIRS="/usr/share:/usr/kde/3.5/share:/usr/local/share" XGUILOADPATH="/home1/ferris/Packages/SNNS/SNNSv4.2" XTERM_LOCALE="C" XTERM_SHELL="/bin/bash" XTERM_VERSION="XTerm(234)" _="/usr/bin/emerge"
I see that this fails now for hdf5-1.6.5-r1, which suggests that this might be a problem with gcc --- at least, at one time we could build: Sun Jun 25 15:19:36 2006 >>> sci-libs/hdf5-1.6.5-r1
No longer in tree
