emerge =media-gfx/graphviz-2.18 exits with an error message on my amd64. Use flags: [ebuild U ] media-gfx/graphviz-2.18 [2.16.1-r3] USE="jpeg png -doc -examples -gnome -gtk* -nls* -perl -python -ruby -tcl -tk" 0 kB Reproducible: Always Steps to Reproduce: 1.emerge graphviz 2. 3. Actual Results: .... x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/gvc -I../../lib/common -I../../lib/graph -I../../lib/cdt -I../../lib/pathplan -I/usr/lib64/R/include -O2 -pipe -march=k8 -MT gv_R.lo -MD -MP -MF .deps/gv_R.Tpo -c gv_R.cpp -fPIC -DPIC -o .libs/gv_R.o gv_R.cpp: In function 'RCallbackFunctionData* R_SWIG_pushCallbackFunctionData(SEXPREC*, SEXPREC*)': gv_R.cpp:759: error: 'calloc' was not declared in this scope gv_R.cpp: In function 'void R_SWIG_popCallbackFunctionData(int)': gv_R.cpp:800: error: 'free' was not declared in this scope gv_R.cpp: In function 'void R_SWIG_ReferenceFinalizer(SEXPREC*)': .... * Messages for package media-gfx/graphviz-2.18: * * ERROR: media-gfx/graphviz-2.18 failed. * Call stack: * ebuild.sh, line 49: Called src_compile * environment, line 2782: Called die * The specific snippet of code: * emake || die "emake failed" * The die message: * emake failed Expected Results: clean compile
emerge --info please.
Portage 2.1.4.4 (default-linux/amd64/2007.0, gcc-4.1.2, glibc-2.6.1-r0, 2.6.24-gentoo-r3 x86_64) ================================================================= System uname: 2.6.24-gentoo-r3 x86_64 AMD Athlon(tm) X2 Dual Core Processor BE-2400 Timestamp of tree: Tue, 18 Mar 2008 11:00:02 +0000 app-shells/bash: 3.2_p17-r1 dev-java/java-config: 1.3.7, 2.1.4 dev-lang/python: 2.4.4-r9 dev-python/pycrypto: 2.0.1-r6 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=k8" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -pipe -march=k8" DISTDIR="/usr/portage/distfiles" FEATURES="distlocks metadata-transfer sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="ftp://sunsite.informatik.rwth-aachen.de/pub/Linux/gentoo " LINGUAS="en" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X acl acpi alsa amd64 berkdb cdr cli compositor cracklib crypt dbus dri dvd fortran fpu gdbm gpm gtk gtk2 hal iconv ipv6 isdnlog java jpeg lm_sensors midi mmx mudflap ncurses nls nptl nptlonly nvidia openmp pam pcre perl png pppd python readline reflection session spl sse sse2 ssl tcpd truetype unicode v4l v4l2 xcomposite xorg zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en" USERLAND="GNU" VIDEO_CARDS="nvidia vesa" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Reopen...
Could you please attach the complete output log of the build? I am totally unable to reproduce.
Created attachment 146881 [details] build log My build log is attached... By the way, the error seems to be architecture-unspecific: same happens on my IBM Thinkpad x31 with Pentium-M...
This issue should be fixed in media-gfx/graphviz-2.18, the R-bindings are disabled for now.
