207304 – sci-biology/emboss-5.0.0 doesn't compile with --as-needed flag

Bug 207304 - sci-biology/emboss-5.0.0 doesn't compile with --as-needed flag

Summary: sci-biology/emboss-5.0.0 doesn't compile with --as-needed flag

Status:	RESOLVED FIXED

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	New packages (show other bugs)
Hardware:	AMD64 Linux

Importance:	High normal (vote)
Assignee:	Olivier Fisette (RETIRED)

URL:
Whiteboard:
Keywords:

Depends on:
Blocks:	as-needed
	Show dependency tree

Reported:	2008-01-24 18:54 UTC by Marcin Deranek
Modified:	2008-01-25 23:52 UTC (History)
CC List:	1 user (show)

See Also:
Package list:
Runtime testing required:	---

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Description Marcin Deranek 2008-01-24 18:54:01 UTC

While compiling emboss-5.0.0 on amd64 with LDFLAGS="-Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z,now" I get an error. Removing "-Wl,--as-needed" from LDFLAGS makes emboss compile.

Reproducible: Always

Steps to Reproduce:
1.add "-Wl,--as-needed" to LDFLAGS
2.try to compile emboss-5.0.0
3.

Actual Results:  
Emerging package fails

Expected Results:  
Emerging should succeed

Portage 2.1.4 (default-linux/amd64/2007.0/desktop, gcc-4.2.2, glibc-2.7-r1, 2.6.23-gentoo-r6 x86_64)
=================================================================
System uname: 2.6.23-gentoo-r6 x86_64 AMD Athlon(tm) 64 X2 Dual Core Processor 5000+
Timestamp of tree: Thu, 24 Jan 2008 15:46:01 +0000
ccache version 2.4 [enabled]
app-shells/bash:     3.2_p33
dev-lang/python:     2.5.1-r5
dev-python/pycrypto: 2.0.1-r6
dev-util/ccache:     2.4-r7
sys-apps/baselayout: 1.12.11.1
sys-apps/sandbox:    1.2.18.1-r2
sys-devel/autoconf:  2.13, 2.61-r1
sys-devel/automake:  1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1
sys-devel/binutils:  2.18-r1
sys-devel/gcc-config: 1.4.0-r4
sys-devel/libtool:   1.5.24
virtual/os-headers:  2.6.23-r3
ACCEPT_KEYWORDS="amd64 ~amd64"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=athlon64 -mtune=athlon64 -msse3 -ftracer -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/udev/rules.d"
CXXFLAGS="-O2 -march=athlon64 -mtune=athlon64 -msse3 -ftracer -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch"
GENTOO_MIRRORS="ftp://ftp.snt.utwente.nl/pub/os/linux/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-znow"
LINGUAS="en pl"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/paludis/local"
SYNC="rsync://rsync.be.gentoo.org/gentoo-portage/"
USE="3dnow 3dnowext X a52 aac aalib accessibility acpi adns alsa amd64 ao apm audiofile avahi bash-completion bcmath berkdb bidi bitmap-fonts bluetooth bzip2 cairo caps cddb cdparanoia cdr clamav cli cracklib crypt cscope ctype cups curl curlwrappers dbus dga directfb dri dts dv dvb dvd dvdr dvdread encode exif expat fbcon ffmpeg fftw firefox flac flatfile foomaticdb ftp gb gd gdbm ggi gif ginac glut gmp gnome gnutls gphoto2 gpm graphviz gstreamer gtk gtkhtml guile hal iconv idn imagemagick imlib isdnlog javascript jbig jikes jpeg jpeg2k kdehiddenvisibility lcms ldap lesstif libcaca libedit libgda libnotify libsamplerate libwww lm_sensors m17n-lib mad maildir matroska mbox mcal memlimit mhash midi mikmod mime mmap mmx mmxext mng mp3 mpeg mpi mplayer mudflap musepack ncurses nntp nocd nptl nptlonly nsplugin offensive ogg openal openexr opengl openmp osc oss pam pcntl pcre pda pdf pic plotutils png portaudio posix ppds pppd qt3support quicktime rdesktop readline recode reflection sdl session sharedmem shorten simplexml skey slang slp sndfile snmp sockets sox speex spell sse sse2 ssl svg sysvipc szip tcpd test theora threads tidy tiff truetype truetype-fonts type1-fonts unicode usb v4l vcd videos vim-syntax vorbis wifi wmf wxwindows x264 xcomposite xine xinerama xml xmlrpc xorg xosd xpm xscreensaver xsl xv xvid yaz zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CAMERAS="canon" ELIBC="glibc" INPUT_DEVICES="keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en pl" USERLAND="GNU" VIDEO_CARDS="radeon v4l"
Unset:  CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

Comment 1 Markus Dittrich (RETIRED) gentoo-dev

2008-01-25 23:52:33 UTC

Thanks for the note and this should be fixed in portage cvs.

cheers,
Markus