Dears mpiCC -shared -Wl,-Bsymbolic -o symbols.oct symbols.o probably_prime.o differentiate.o findsymbols.o numden.o syminfo.o symlsolve.o sumterms.o sym-bool.o sym-create.o ov-ex.o ov-vpa.o ov-ex-mat.o ov-relational.o op-ex-mat.o op-ex.o op-vpa.o -L/usr/lib -lginac -L/usr/lib -lcln -lgmp -L/usr/lib/octave-2.1.73 -loctinterp -loctave -lcruft -lz -llapack -lblas -lfftw3 -lreadline -lncurses -ldl -lmpi -lm -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/../../.. -lz -lmpi -lgfortranbegin -lgfortran -lm -lgcc_s make[2]: Opuszczenie katalogu `/var/tmp/portage/sci-mathematics/octave-forge-2006.03.17/work/octave-forge-2006.03.17/main/symbolic' make[1]: Obiekt `all' nie został wykonany z powodu błędów. make[1]: Opuszczenie katalogu `/var/tmp/portage/sci-mathematics/octave-forge-2006.03.17/work/octave-forge-2006.03.17/main' Build finished. main/ not complete. Some functions failed to compile (search build.log for errors) but many other functions will still work correctly. Run 'make check' to see what works. Run 'make install' to install what has been built. make: *** [all] Błąd 1 !!! ERROR: sci-mathematics/octave-forge-2006.03.17 failed. Call stack: ebuild.sh, line 1632: Called dyn_compile ebuild.sh, line 983: Called qa_call 'src_compile' ebuild.sh, line 44: Called src_compile octave-forge-2006.03.17.ebuild, line 33: Called die Regards.
$ emerge --info Portage 2.1.2.11 (default-linux/x86/2007.0/desktop, gcc-4.1.2, glibc-2.5-r4, 2.6.17-gentoo-r8 i686) ================================================================= System uname: 2.6.17-gentoo-r8 i686 AMD Athlon(tm) 2600+ Gentoo Base System release 1.12.9 Timestamp of tree: Sat, 11 Aug 2007 05:50:01 +0000 ccache version 2.4 [disabled] dev-java/java-config: 1.3.7, 2.0.33-r1 dev-lang/python: 2.4.4-r4 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.16 sys-devel/libtool: 1.5.23b virtual/os-headers: 2.6.21 ACCEPT_KEYWORDS="x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=i686 -O2 -pipe -msse -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/X11/xkb /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-march=i686 -O2 -pipe -msse" DISTDIR="/mnt/storage/portage/distfiles" FEATURES="distlocks metadata-transfer parallel-fetch sandbox sfperms strict" GENTOO_MIRRORS=" ftp://mirror.switch.ch/mirror/gentoo/ http://distfiles.gentoo.org http://www.ibiblio.org/pub/Linux/distributions/gentoo http://gentoo.prz.rzeszow.pl " LANG="pl_PL.UTF-8" LC_ALL="pl_PL.UTF-8" LINGUAS="pl en" MAKEOPTS="-j4" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/mnt/storage/portage" SYNC="rsync://rsync.europe.gentoo.org/gentoo-portage" USE="16bit 3dnow 3dnowext 7zip X a52 aac aalib accessibility acl acpi addbookmarks akode alsa amr ao aotuv applet arts artswrappersuid artworkextra async audacious audiofile avahi bash-completion bcp berkdb bidi bitmap-fonts bittorrent bjam bl blas bonobo bzip2 c++ cairo caps catalogs cdda cddb cdinstall cdparanoia cdr cgi chroot cli connectionstatus cpudetection cracklib crypt css ctype cups curl cvs cvsgraph cxx daap dbase dbus dbx dga directfb djvu dlopen dmi dnd doc double-precision dri dts dv dvb dvd dvdnav dvdr dvdread dvi eds emacs emboss encode epiphany epson epydoc esd evo examples exif expat extensions extramodules fam fame fastcgi fat ffmpeg fftw firefox flac flash font-server force-cgi-redirect fortran fpx frascend ftp fuse gadu gb gcj gconf gd gdal gdb gdbm gif gimp gimpprint ginac glade glut gmp gnokii gnome gnuplot gphoto2 gpm graphviz gs gsl gsm gstreamer gtk gzip h323 hal haskell history howl howl-compat html icecast iconv id3 idn ieee1394 image imagemagick imap inkjar iproute2 ipsec ipv6 irda irmc isdnlog jpeg jpeg2k kcal kde kdeenablefinal kdepim kdm kerberos kexi kipi ladspa lame lash latex lcd lcms ldap libgda libnotify libsamplerate libvisual lirc live lm_sensors logrotate lzo lzw mad mail maildir math mdb mdnsresponder-compat midi mikmod mime mjpeg mmap mmx mmxext mng mono mouse mozdevelop mp2 mp3 mp4 mp4live mpeg mpeg2 mpi mplayer mpm-worker msn mudflap musepack musicbrainz nas nat ncurses net network nfs nis nls nntp nptl nptlonly nsplugin ntfs numarray numeric odbc ode office ogdi ogg openal opengl openmp openssh openssl oss pam pango pcre pda pdf perl player png portaudio posix postgres povray ppds pppd psyco pvm pyste python qt3 qt3support qt4 quicktime rar rdesktop readline real realmedia recode reflection reiserfs resolvconf rss samba sametime sasl scanner screen sdl sensord server session sftp shout simplexml slang slp sms sndfile soap sockets sound spamassassin speech spell spl sql sqlite sqlite3 sse ssl stream subversion svg svgz svk svn-mirror swat swig sysfs syslog tcl tcpd tetex text texteffect tga themes theora thesaurus threads tiff tivo tk tlen tokenizer tools transcode truetype truetype-fonts tta tv_check tv_pick_cgi type1 type1-fonts unicode usb userlocales v4l v4l2 valgrind vcd vdr verbose vidix vim vim-pager vim-with-x visualization vlm vnc vncviewer voice vorbis vorbis-psy wav wavpack weak-algorithms webdav win32codecs winpopup wma wmf x264 x86 xcomposite xface xforms xfs xft xine xml xmlrpc xorg xpm xscreensaver xsl xv xvid xvmc yaepg yp yv12 zip zlib zvbi" ALSA_CARDS="emu10k1 via82xx" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="pl en" LIRC_DEVICES="serial" USERLAND="GNU" VIDEO_CARDS="fbdev radeon vesa frglx" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PORTDIR_OVERLAY
Set your locales to C when reporting bugs, we don't want errors in Polish. Also, you didn't post the actual errors at all.
*** Bug 188979 has been marked as a duplicate of this bug. ***
Created attachment 128726 [details] octave-forge-2006.03.17-build.log i've just run into similar problems with sci-mathematics/octave-forge-2006.03.17 USE="X ginac qhull" on amd64. 2006.03.17-r1 seems to build at least. Portage 2.1.2.11 (default-linux/amd64/2007.0/desktop, gcc-4.1.2, glibc-2.5-r4, 2.6.22-gentoo-r2 x86_64) ================================================================= System uname: 2.6.22-gentoo-r2 x86_64 Intel(R) Core(TM)2 Duo CPU E6550 @ 2.33GHz Gentoo Base System release 1.12.9 Timestamp of tree: Sun, 19 Aug 2007 09:20:01 +0000 dev-java/java-config: 1.3.7, 2.0.33-r1 dev-lang/python: 2.4.4-r4 dev-python/pycrypto: 2.0.1-r6 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.61 sys-devel/automake: 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.17 sys-devel/gcc-config: 1.3.16 sys-devel/libtool: 1.5.24 virtual/os-headers: 2.6.21 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=nocona -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/X11/xkb" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/gconf /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c" CXXFLAGS="-march=nocona -O2 -pipe" DISTDIR="/var/portage/distfiles" FEATURES="distlocks metadata-transfer sandbox sfperms strict" GENTOO_MIRRORS="http://gentoo.ynet.sk/pub" LC_ALL="en_US.utf8" LINGUAS="en de" MAKEOPTS="-j4" PKGDIR="/var/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --delete-after --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --filter=H_**/files/digest-*" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/var/portage/repos/gentoo" PORTDIR_OVERLAY="/var/portage/repos/private" SYNC="rsync://192.168.0.1/gentoo-portage" USE="3dnow 3dnowext X a52 aac acpi alsa amd64 beagle berkdb bitmap-fonts bzip2 cairo caps cddb cdr cli cracklib crypt cups dbus dri dvd dvdr dvdread eds emboss encode evo exif fam ffmpeg firefox flac fortran gd gdbm gif gimp gnome gpm gstreamer gtk hal hddtemp iconv icu ipod ipv6 isdnlog java jpeg jpeg2k lcms ldap libnotify lm_sensors mad matroska midi mikmod mmap mmx mmxext mono mp3 mpeg mudflap ncurses nls nptl nptlonly nvidia ogg opengl openmp pam pcre pdf perl plotutils png pppd python qt3support quicktime readline reflection ruby sdl session spell spl sse sse2 ssl ssse3 svg tcpd tetex theora threads tiff truetype truetype-fonts type1-fonts unicode usb vcd vorbis xattr xml xorg xv xvid zlib" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en de" USERLAND="GNU" VIDEO_CARDS="nvidia nv" Unset: CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Dears I am really sorry for putting error messages in Polish. There is English version below: mpiCC -shared -Wl,-Bsymbolic -o make_sparse.oct sparse_ops.o make_sparse.o sparse_full.o sparse_inv.o complex_sparse_ops.o -lsuperlu -L. -L/usr/lib/octave-2.1.73 -loctinterp -loctave -lcruft -lz -llapack -lblas -lfftw3 -lreadline -lncurses -ldl -lmpi -lm -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/../../.. -lz -lmpi -lgfortranbegin -lgfortran -lm -lgcc_s make[2]: Leaving directory `/var/tmp/portage/sci-mathematics/octave-forge-2006.03.17/work/octave-forge-2006.03.17/main/sparse' mkoctfile -Doctave_idx_type=int -DHAVE_OCTAVE_21 -v -v -o symbols.oct symbols.o probably_prime.o differentiate.o findsymbols.o numden.o syminfo.o symlsolve.o sumterms.o sym-bool.o sym-create.o ov-ex.o ov-vpa.o ov-ex-mat.o ov-relational.o op-ex-mat.o op-ex.o op-vpa.o -L/usr/lib -lginac -L/usr/lib -lcln -lgmp mpiCC -shared -Wl,-Bsymbolic -o symbols.oct symbols.o probably_prime.o differentiate.o findsymbols.o numden.o syminfo.o symlsolve.o sumterms.o sym-bool.o sym-create.o ov-ex.o ov-vpa.o ov-ex-mat.o ov-relational.o op-ex-mat.o op-ex.o op-vpa.o -L/usr/lib -lginac -L/usr/lib -lcln -lgmp -L/usr/lib/octave-2.1.73 -loctinterp -loctave -lcruft -lz -llapack -lblas -lfftw3 -lreadline -lncurses -ldl -lmpi -lm -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.1/../../.. -lz -lmpi -lgfortranbegin -lgfortran -lm -lgcc_s make[2]: Leaving directory `/var/tmp/portage/sci-mathematics/octave-forge-2006.03.17/work/octave-forge-2006.03.17/main/symbolic' make[1]: Target `all' not remade because of errors. make[1]: Leaving directory `/var/tmp/portage/sci-mathematics/octave-forge-2006.03.17/work/octave-forge-2006.03.17/main' Build finished. main/ not complete. Some functions failed to compile (search build.log for errors) but many other functions will still work correctly. Run 'make check' to see what works. Run 'make install' to install what has been built. make: *** [all] Error 1 !!! ERROR: sci-mathematics/octave-forge-2006.03.17 failed. Call stack: ebuild.sh, line 1632: Called dyn_compile ebuild.sh, line 983: Called qa_call 'src_compile' ebuild.sh, line 44: Called src_compile octave-forge-2006.03.17.ebuild, line 33: Called die !!! emake failed !!! If you need support, post the topmost build error, and the call stack if relevant. !!! A complete build log is located at '/var/tmp/portage/sci-mathematics/octave-forge-2006.03.17/temp/build.log'.
I obtain the same result. Use ginac and qhull flag doesn't help. octave-forge doesn't compile. emerge --info Portage 2.1.4.4 (default-linux/x86/2007.0/desktop, gcc-4.1.2, glibc-2.6.1-r0, 2.6.24-gentoo-r2 i686) ================================================================= System uname: 2.6.24-gentoo-r2 i686 Genuine Intel(R) CPU T2500 @ 2.00GHz Timestamp of tree: Sun, 17 Feb 2008 11:46:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p17-r1 dev-java/java-config: 1.3.7, 2.1.4 dev-lang/python: 2.4.4-r6 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.10-r5 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r1 sys-devel/automake: 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10 sys-devel/binutils: 2.18-r1 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/splash /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-O2 -march=prescott -pipe -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="ccache distlocks metadata-transfer parallel-fetch sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="ftp://ftp.rnl.ist.utl.pt/pub/gentoo/ http://78.46.32.117/ http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/" LANG="it_IT.UTF-8" LC_ALL="it_IT.UTF-8" LINGUAS="it" MAKEOPTS="-j3" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/gechi /usr/local/portage" SYNC="rsync://rsync.it.gentoo.org/gentoo-portage" USE="X acl acpi alsa bash-completion berkdb bitmap-fonts bluetooth bzip2 cairo cdparanoia cdr cli cracklib crypt cscope ctype cups dbus dga directfb doc dri dvd dvdr dvdread emacs encode esd evo fam fbcon firefox foomaticdb fortran gdbm gif gpm gstreamer gtk hal iconv ieee1394 ipv6 isdnlog java javascript jpeg lm_sensors mad midi mikmod motif mp3 mpeg mudflap ncurses nls nptl nptlonly nsplugin ogg opengl openmp pam pcmcia pcre pdf perl png ppds pppd python qt3 qt3support quicktime readline reflection scanner sdl session spell spl sse sse2 ssl startup-notification svg svga symlink tcpd tetex tiff truetype truetype-fonts type1-fonts unicode usb vorbis wifi win32codecs x86 xinerama xml xorg xpm xulrunner xv zlib" ALSA_CARDS="hda-intel" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="it" USERLAND="GNU" VIDEO_CARDS="vesa fbdev i810 vga" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LDFLAGS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Please try octave-3.0.0 and the new split octave-forge ebuilds which are in the science overlay if at all possible. They will be merged into the main tree soonish and should work fine. Best, Markus
(In reply to comment #7) > Please try octave-3.0.0 and the new split octave-forge > ebuilds which are in the science overlay if at all > possible. They will be merged into the main tree soonish > and should work fine. We are months ahead now, when is soonish?
(In reply to comment #8) > (In reply to comment #7) > > Please try octave-3.0.0 and the new split octave-forge > > ebuilds which are in the science overlay if at all > > possible. They will be merged into the main tree soonish > > and should work fine. > > We are months ahead now, when is soonish? > octave-3.0.0 will hit portage as soon as the one remaining bug it depends on is resolved (see bug #153462). The split octave-forge ebuilds are not yet reliable enough to be in portage as far as I am concerned (see bug #179885). People are still reporting problems and I have not gotten nearly enough feedback from people to feel comfortable to release this to the masses (sometimes a simple "works for me" helps a lot). Best, Markus
(In reply to comment #9) > octave-3.0.0 will hit portage as soon as the one remaining bug > it depends on is resolved (see bug #153462). I compiled 3.0.1 myself last night and saw some nasty segmentation faults in relation to GCC 4.2.4. (...and bad hardware is also possible ofcourse)
That's very strange. I have never encountered any segfaults with octave. Are you sure its octave's fault and not some bad memory or broken toolchain? Thanks, Markus
(In reply to comment #11) > That's very strange. I have never encountered any segfaults > with octave. Are you sure its octave's fault and not some > bad memory or broken toolchain? Both are possible. It seems that 'high load' will cause it. But no memory errors were ever detected on 8GB of the memory the box has.
If you can track down a condition that reproducably triggers this please file a bug for it. I use octave daily full blast and haven't had any issues yet. Best, Markus
(In reply to comment #13) > If you can track down a condition that reproducably triggers > this please file a bug for it. I use octave daily full blast > and haven't had any issues yet. The make check seems to be consistently segfaulting on: scripts/linear-algebra/condest.m .......................panic: Segmentation fault -- stopping myself...
Thanks, I'll have a look at this. This could also be a problem in one of the support libraries (lapack, etc.) but I am not sure what type of things condest.m exercises. Best, Markus
Created attachment 159888 [details] Build log Same problems. Attached my error log. emerge --info: Portage 2.1.4.4 (default-linux/x86/2006.1/desktop, gcc-3.4.6, glibc-2.6.1-r0, 2.6.24-gentoo-r8 i686) ================================================================= System uname: 2.6.24-gentoo-r8 i686 Intel(R) Pentium(R) 4 CPU 2.53GHz Timestamp of tree: Mon, 07 Jul 2008 23:45:01 +0000 ccache version 2.4 [enabled] app-shells/bash: 3.2_p33 dev-java/java-config: 1.3.7, 2.1.6 dev-lang/python: 2.3.5-r3, 2.4.4-r13, 2.5.1-r4 dev-python/pycrypto: 2.0.1-r6 dev-util/ccache: 2.4-r7 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r2 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.3.16 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="x86" CBUILD="i686-pc-linux-gnu" CFLAGS="-march=pentium4 -O3 -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/3.5/env /usr/kde/3.5/share/config /usr/kde/3.5/shutdown /usr/share/config" CONFIG_PROTECT_MASK="/etc/env.d /etc/env.d/java/ /etc/fonts/fonts.conf /etc/gconf /etc/php/apache2-php5/ext-active/ /etc/php/cgi-php5/ext-active/ /etc/php/cli-php5/ext-active/ /etc/revdep-rebuild /etc/terminfo /etc/texmf/web2c /etc/udev/rules.d" CXXFLAGS="-march=pentium4 -O3 -pipe -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="ccache distlocks fixpackages metadata-transfer nostrip parallel-fetch sandbox sfperms strict unmerge-orphans userfetch" GENTOO_MIRRORS="http://gentoo.cites.uiuc.edu/pub/gentoo/ http://gentoo.osuosl.org/ http://lug.mtu.edu/gentoo/ http://gentoo.chem.wisc.edu/gentoo/ http://mirror.datapipe.net/gentoo" LANG="en_US.utf8" LINGUAS="en ar" PKGDIR="/usr/portage/packages" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --compress --force --whole-file --delete --stats --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/portage/local/layman/xeffects /usr/portage/local/layman/sunrise /usr/portage/local/layman/science /usr/portage/local/layman/roslin /usr/portage/local/layman/other" SYNC="rsync://rsync.us.gentoo.org/gentoo-portage" USE="7zip X a52 aac aalib acpi aim alsa apache2 apm asf avi bash-completion berkdb bitmap-fonts bittorrent blas browserplugin bzip2 cairo calendar caps cdparanoia cdr cli cracklib crypt cups cvs dbus dga directfb divx4linux doc dri dvb dvd dvdnav dvdr dvdread eds emacs emboss encode exif fam fbcon fbdev ffmpeg fftw firefox flac fortran ftp gd gdbm gif gimp glitz gnuplot gnutella gphoto2 gpm gstreamer gtk guile hal hbci hdri i8x0 iconv icq imagemagick imap imlib ipv6 isdnlog jabber java javascript jpeg jpeg2k justify kde lame lapack latex lcms ldap leim libcaca libsamplerate live loop-aes lyx mad maildir matroska mbox md5sum midi mikmod mjpeg mmx mozilla mp2 mp3 mpeg mplayer msn mudflap musepack mysql ncurses network nls nptl nptlonly nsplugin oav ofx ogg oggvorbis openexr opengl openmp oscar oss pam pcre pda pdf pdflib perl pgp php plotutils png pnm pnp ppds pppd python qt qt3 qt4 quicktime radio rar readline real reflection rss rtsp samba sasl sdl session shout sox speex spell spl srt sse ssl stream subtitles subversion svg svga tcpd tetex tga theora threads tiff tivo transparency truetype truetype-fonts type1-fonts unicode usb v4l vcd vesa videos vidix vorbis wavpack win32codecs wma wmf wxwindows x264 x86 xcomposite xine xml xorg xosd xscreensaver xv xvid yahoo zlib" ALSA_CARDS="intel8x0" ALSA_PCM_PLUGINS="adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mulaw multi null plug rate route share shm softvol" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif so speling status unique_id userdir usertrack vhost_alias" ELIBC="glibc" INPUT_DEVICES="evdev keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LINGUAS="en ar" USERLAND="GNU" VIDEO_CARDS="radeon vesa fbdev" Unset: CPPFLAGS, CTARGET, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LDFLAGS, MAKEOPTS, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS If this can't be fixed, I'll just unmerge this and wait for 3.0 and the split ebuilds. More of a SciPy person now ;-)
I see a similar problem: sci-mathematics/octave-forge-2006.03.17 doesn't compile. The immediate reason for compilation failed is as follows: ov-fixed-complex.cc: In member function 'FixedMatrix octave_fixed_complex::fixed_matrix_value(bool) const': ov-fixed-complex.cc:280: error: 'Vok_to_lose_imaginary_part' was not declared in this scope ov-fixed-cx-mat.cc: In member function 'virtual NDArray octave_fixed_complex_matrix::array_value(bool) const': ov-fixed-cx-mat.cc:101: error: 'Vok_to_lose_imaginary_part' was not declared in this scope ov-fixed-cx-mat.cc: In member function 'virtual double octave_fixed_complex_matrix::double_value(bool) const': ov-fixed-cx-mat.cc:356: error: 'Vok_to_lose_imaginary_part' was not declared in this scope ov-fixed-cx-mat.cc:370: error: 'Vdo_fortran_indexing' was not declared in this scope There are quite lots of such missing declarations. The beginning of my emerge--info follows (would be happy to provide all info if this can help): Portage 2.1.4.4 (default/linux/amd64/2008.0, gcc-4.1.2, glibc-2.6.1-r0, 2.6.25-gentoo-r7-alb x86_64) ================================================================= System uname: 2.6.25-gentoo-r7-alb x86_64 Dual Core AMD Opteron(tm) Processor 285 Timestamp of tree: Wed, 06 Aug 2008 16:45:01 +0000 app-shells/bash: 3.2_p33 dev-lang/python: 2.5.2-r6 sys-apps/baselayout: 1.12.11.1 sys-apps/sandbox: 1.2.18.1-r2 sys-devel/autoconf: 2.13, 2.61-r2 sys-devel/automake: 1.5, 1.7.9-r1, 1.8.5-r3, 1.9.6-r2, 1.10.1 sys-devel/binutils: 2.18-r3 sys-devel/gcc-config: 1.4.0-r4 sys-devel/libtool: 1.5.26 virtual/os-headers: 2.6.23-r3 ACCEPT_KEYWORDS="amd64" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=opteron -mmmx -msse -msse2 -msse3 -m3dnow -momit-leaf-frame-pointer -Os -pipe -fomit-frame-pointer -finline-functions-called-once" CHOST="x86_64-pc-linux-gnu"
(In reply to comment #17) > I see a similar problem: sci-mathematics/octave-forge-2006.03.17 doesn't > compile. The immediate reason for compilation failed is as follows: I have unmasked the new octave-3.0.1 last night. If you need octave-forge I strongly recommend that you move to octave-3.0.1 and emerge the split octave-forge ebuilds from the science overlay via layman (the current monolithic octave forge in portage is incompatible with octave-3). Should there be any problems with these split octave-forge ebuilds (which I don't hope) please file new bugs instead of appending to this already rather long bug thread. Thanks a lot for your patience. Best, Markus
*** This bug has been marked as a duplicate of bug 210356 ***
