sci-mathematics/pari-2.1.7 emerge fails with the following message: #emerge -av sci-mathematics/pari These are the packages that I would merge, in order: Calculating dependencies ...done! [ebuild N ] sci-mathematics/pari-2.1.7 USE="-doc -emacs" 0 kB Total size of downloads: 0 kB Do you want me to merge these packages? [Yes/No] >>> emerge (1 of 1) sci-mathematics/pari-2.1.7 to / >>> checksums files ;-) pari-2.1.5-r4.ebuild >>> checksums files ;-) pari-2.1.6.ebuild >>> checksums files ;-) pari-2.1.7.ebuild >>> checksums files ;-) files/docs.patch >>> checksums files ;-) files/digest-pari-2.1.5-r4 >>> checksums files ;-) files/wrong_functype.patch >>> checksums files ;-) files/digest-pari-2.1.6 >>> checksums files ;-) files/digest-pari-2.1.7 >>> checksums files ;-) files/wrong_functype-r1.patch >>> checksums src_uri ;-) pari-2.1.7.tgz >>> Unpacking source... >>> Unpacking pari-2.1.7.tgz to /var/tmp/portage/pari-2.1.7/work * Applying docs.patch ... [ ok ]>>> Source unpacked. >>> Compiling source in /var/tmp/portage/pari-2.1.7/work/pari-2.1.7 ... i686-pc-linux-gnu-as i686-pc-linux-gnu-ld i686-pc-linux-gnu-gcc i686-pc-linux-gnu-g++ * Building for i686-linux true Configuring pari-2.1.7 (STABLE) Checking echo to see how to suppress newlines... ...using -n. Looking for some tools first ... ...ld is /usr/bin/ld ...zcat is /bin/zcat ...gzip is /bin/gzip ...ranlib is /usr/bin/ranlib ...perl is /usr/bin/perl ...I could not find emacs. Building for architecture: i686 running linux (ix86 kernel) Checking for optional libraries and headers... ...Found libreadline in /lib ...Found libncurses in /lib ...Found GNU readline header in /usr/include/readline ...Library ncurses needed by readline GNU compiler version 3.4.5 (Gentoo 3.4.5, ssp-3.4.5-1.0, pie-8.7.9) C compiler is i686-pc-linux-gnu-gcc -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer ...Hum, this looks like GNU as Assembler is i686-pc-linux-gnu-as C PreProcessor is i686-pc-linux-gnu-gcc -E -I. Executable linker is i686-pc-linux-gnu-gcc -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer -Xlinker -export-dynamic ...Hum, this looks like GNU ld Dynamic Lib linker is /usr/bin/ld -shared -soname $(LIBPARI_SONAME) -lc -lm Given the previous choices, sizeof(long) is 4 chars. The internal word representation of a double is l[1], l[0]. ========================================================================== Checking some common types... ...Found ulong. Looking in C lib for some symbols... ...I did not find exp2. ...Found strftime. ...Found getrusage. ...Found sigrelse. ...I did not find TIOCGWINSZ. ...Found getrlimit. ...Found opendir. ...I did not find vsnprintf. ...I did not find dlopen. Try again, with -ldl this time... ...Found dlopen. Installation prefix ? [/usr] ...for architecture-independant files (share-prefix) ? [] ..."gp" executable ? [/usr/bin] ..."pari" library ? [/usr/lib] ...include files ? [/usr/include/pari] ...manual pages ? [/usr/share/man/man1] ...documentation, examples, and emacs macros ? [/usr/share/doc/pari-2.1.7] ...miscellaneous data (galois resolvents) ? [/usr/share/pari-2.1.7] Default is dynamic executable and shared library, graphic=none ========================================================================== Extracting examples/Makefile.linux-i686 Extracting Olinux-i686/Makefile Extracting Olinux-i686/../Odos/paricfg.h Extracting Olinux-i686/paricfg.h Extracting Makefile Extracting scripts and macros ...in doc ...in emacs ...in misc ========================================================================== Shall we try to build pari 2.1.7 (released) now (y/n)? [n] Ok. Type "make install" when you are ready Bye ! * Building shared library... i686-pc-linux-gnu-gcc -E -I. ../src/kernel/ix86/l0asm.c | sed -e '/^#/d' -e '/^ *#line/d' -e 's/% */%/g' > level0.s cat ../src/kernel/ix86/level0.h ../src/kernel/none/level1.h > pariinl.h i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o mp.o ../src/kernel/none/mp.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o alglin1.o ../src/basemath/alglin1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o alglin2.o ../src/basemath/alglin2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o arith1.o ../src/basemath/arith1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o arith2.o ../src/basemath/arith2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base1.o ../src/basemath/base1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base2.o ../src/basemath/base2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base3.o ../src/basemath/base3.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base4.o ../src/basemath/base4.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base5.o ../src/basemath/base5.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o bibli1.o ../src/basemath/bibli1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o bibli2.o ../src/basemath/bibli2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch1.o ../src/basemath/buch1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch2.o ../src/basemath/buch2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch3.o ../src/basemath/buch3.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch4.o ../src/basemath/buch4.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o galconj.o ../src/basemath/galconj.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o gen1.o ../src/basemath/gen1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o gen2.o ../src/basemath/gen2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o gen3.o ../src/basemath/gen3.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o ifactor1.o ../src/basemath/ifactor1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o polarit1.o ../src/basemath/polarit1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o polarit2.o ../src/basemath/polarit2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o polarit3.o ../src/basemath/polarit3.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o rootpol.o ../src/basemath/rootpol.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o subgroup.o ../src/basemath/subgroup.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o trans1.o ../src/basemath/trans1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o trans2.o ../src/basemath/trans2.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o trans3.o ../src/basemath/trans3.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o elliptic.o ../src/modules/elliptic.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o galois.o ../src/modules/galois.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o kummer.o ../src/modules/kummer.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o mpqs.o ../src/modules/mpqs.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o nffactor.o ../src/modules/nffactor.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o stark.o ../src/modules/stark.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o subfield.o ../src/modules/subfield.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o thue.o ../src/modules/thue.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o anal.o ../src/language/anal.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o compat.o ../src/language/compat.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o errmsg.o ../src/language/errmsg.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o es.o ../src/language/es.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o helpmsg.o ../src/language/helpmsg.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o init.o ../src/language/init.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o sumiter.o ../src/language/sumiter.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o mpinl.o ../src/kernel/none/level1.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o kernel.o level0.s rm -f libpari.so.2.1.7 /usr/bin/ld -o libpari.so.2.1.7 -shared -soname libpari.so.1 -lc -lm kernel.o mp.o alglin1.o alglin2.o arith1.o arith2.o base1.o base2.o base3.o base4.o base5.o bibli1.o bibli2.o buch1.o buch2.o buch3.o buch4.o galconj.o gen1.o gen2.o gen3.o ifactor1.o polarit1.o polarit2.o polarit3.o rootpol.o subgroup.o trans1.o trans2.o trans3.o elliptic.o galois.o kummer.o mpqs.o nffactor.o stark.o subfield.o thue.o anal.o compat.o errmsg.o es.o helpmsg.o init.o sumiter.o mpinl.o /usr/bin/ld: warning: creating a DT_TEXTREL in object. rm -f libpari.so.1 rm -f libpari.so ln -s libpari.so.2.1.7 libpari.so.1 ln -s libpari.so.2.1.7 libpari.so * Building executables... i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/language -I/usr/include -o gp.o ../src/gp/gp.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/graph -o gp_init.o ../src/gp/gp_init.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/language -I/usr/include -o gp_rl.o ../src/gp/gp_rl.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -o highlvl.o ../src/gp/highlvl.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -o whatnow.o ../src/gp/whatnow.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -o plot.o ../src/graph/plotnull.c i686-pc-linux-gnu-gcc -c -O3 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/graph -o plotport.o ../src/graph/plotport.c rm -f gp-dyn i686-pc-linux-gnu-gcc -o gp-dyn -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer -Xlinker -export-dynamic gp.o gp_init.o gp_rl.o highlvl.o whatnow.o plot.o plotport.o -Xlinker -rpath -Xlinker /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686:/usr/lib: -L/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686 -L/lib -lreadline -lncurses -L/usr/lib -lpari -ldl -lm rm -f ../gp ln -s Olinux-i686/gp-dyn ../gp make: `../gp' is up to date. >>> Source compiled. >>> Test phase [not enabled]: sci-mathematics/pari-2.1.7 >>> Install pari-2.1.7 into /var/tmp/portage/pari-2.1.7/image/ category sci-mathematics cd Olinux-i686; make install make[1]: Entering directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686' mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/lib rm -f /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.2.1.7 ../config/install libpari.so.2.1.7 /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.2.1.7 rm -f /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.1 rm -f /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so ln -s libpari.so.2.1.7 /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.1 ln -s libpari.so.2.1.7 /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/include/pari ../config/install -m 644 paricfg.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari for i in pariinl; do \ ../config/install -m 644 $i.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari; done for i in pari paritype paricast paricom parierr parigen paristio parisys pariport paridecl; do \ ../config/install -m 644 ../src/headers/$i.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari; done rm -f /var/tmp/portage/pari-2.1.7/image//usr/include/pari/genpari.h ln -s pari.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari/genpari.h mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/bin rm -f /var/tmp/portage/pari-2.1.7/image//usr/bin/gp-2.1 /var/tmp/portage/pari-2.1.7/image//usr/bin/gp i686-pc-linux-gnu-gcc -o /var/tmp/portage/pari-2.1.7/image//usr/bin/gp-2.1 -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer -Xlinker -export-dynamic gp.o gp_init.o gp_rl.o highlvl.o whatnow.o plot.o plotport.o -Xlinker -rpath -Xlinker /usr/lib: -L/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686 -L/lib -lreadline -lncurses -L/usr/lib -lpari -ldl -lm strip /var/tmp/portage/pari-2.1.7/image//usr/bin/gp-2.1 ln -s gp-2.1 /var/tmp/portage/pari-2.1.7/image//usr/bin/gp mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 ../config/install -m 644 ../doc/gphelp.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 ../config/install -m 644 ../doc/gp.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 rm -f /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1/pari.1 ln -s gp.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1/pari.1 mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/AUTHORS /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Announce.2.1 /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/CHANGES /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/COMPAT /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/COPYING /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/CVS.txt /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/MACHINES /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/NEW /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/README /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/TODO /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc /var/tmp/portage/pari-2.1.7/image//usr/bin ../config/install ../misc/tex2mail /var/tmp/portage/pari-2.1.7/image//usr/bin ../config/install -m 644 ../doc/tex2mail.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 ../config/install -m 644 ../misc/README /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/color.dft /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/gpalias /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install ../misc/gpflog /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/gprc.dft /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/new.dic /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/pari.xpm /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install ../misc/xgp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/pari-2.1.7 for f in ../data/*; do ../config/install -m 644 $f /var/tmp/portage/pari-2.1.7/image//usr/share/pari-2.1.7; done 2>/dev/null mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/bin /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cd ../doc; make all make[2]: Entering directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/doc' rm -f wantpdfoutput rm -f users.std; tex users; /bin/sh: tex: command not found make[2]: *** [users.dvi] Error 127 make[2]: Leaving directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/doc' make[1]: [install-doc] Error 2 (ignored) ../config/install ../doc/gphelp /var/tmp/portage/pari-2.1.7/image//usr/bin ../config/install -m 644 ../doc/Makefile /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/translations /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/appa.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/appb.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/appc.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/paricfg.tex.in /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/parimacro.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/pdfmacs.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/refcard.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/tutorial.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/users.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch1.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch2.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch3.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch4.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch5.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/paricfg.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/users.dvi /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/users.dvi': No such file or directory ../config/install -m 644 ../doc/tutorial.dvi /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/tutorial.dvi': No such file or directory ../config/install -m 644 ../doc/refcard.dvi /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/refcard.dvi': No such file or directory ../config/install -m 644 ../doc/refcard.ps /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/refcard.ps': No such file or directory mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/EXPLAIN /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/Inputrc /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/Makefile /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/bench.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/cl.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/classno.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/contfrac.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/lucas.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/matexp.c /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/rho.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/squfof.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/taylor.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples make[1]: Leaving directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686' man: gzipping man page: gp.1 gzipping man page: tex2mail.1 fixing man page symlink: pari.1.gz removing old symlink: pari.1 gzipping man page: gphelp.1 prepallstrip: strip: i686-pc-linux-gnu-strip --strip-unneeded /usr/bin/gp-2.1 /usr/lib/libpari.so.2.1.7 QA Notice: the following files contain insecure RUNPATH's Please file a bug about this at http://bugs.gentoo.org/ For more information on this issue, kindly review: http://bugs.gentoo.org/81745 /usr/lib: usr/bin/gp-2.1 QA Notice: the following files contain runtime text relocations Text relocations force the dynamic linker to perform extra work at startup, waste system resources, and may pose a security risk. On some architectures, the code may not even function properly, if at all. TEXTREL usr/lib/libpari.so.2.1.7 QA Notice: the following files contain executable stacks Files with executable stacks will not work properly (or at all!) on some architectures/operating systems. A bug should be filed at http://bugs.gentoo.org/ to make sure the file is fixed. RWX --- --- usr/lib/libpari.so.2.1.7 !!! ERROR: sci-mathematics/pari-2.1.7 failed. !!! Function dyn_install, Line 1094, Exitcode 0 !!! Aborting due to serious QA concerns with RUNPATH/RPATH !!! If you need support, post the topmost build error, NOT this status message. #emerge --info Portage 2.1_pre3-r1 (default-linux/x86/2005.1, gcc-3.4.5, glibc-2.3.5-r3, 2.6.14-gentoo-r6 i686) ================================================================= System uname: 2.6.14-gentoo-r6 i686 Intel(R) Celeron(R) CPU 2.00GHz Gentoo Base System version 1.12.0_pre12 ccache version 2.4 [enabled] dev-lang/python: 2.3.5-r2, 2.4.2 sys-apps/sandbox: 1.2.17 sys-devel/autoconf: 2.13, 2.59-r7 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.6-r1 sys-devel/binutils: 2.16.1-r1 sys-devel/libtool: 1.5.22 virtual/os-headers: 2.6.11-r3 ACCEPT_KEYWORDS="x86 ~x86" AUTOCLEAN="yes" CBUILD="i686-pc-linux-gnu" CFLAGS="-O3 -march=pentium4 -pipe -fomit-frame-pointer" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3/share/config /usr/lib/mozilla/defaults/pref /usr/share/X11/xkb /usr/share/config /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-O3 -march=pentium4 -pipe -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig ccache distlocks sandbox sfperms strict" GENTOO_MIRRORS="http://trumpetti.atm.tut.fi/gentoo/ ftp://ftp.dtiltas.lt/mirror/gentoo/ http://pandemonium.tiscali.de/pub/gentoo/" LC_ALL="lt_LT.utf8" LINGUAS="lt" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="x86 X a52 aac aalib acpi alsa apm artworkextra asf audiofile avi bash-completion berkdb bitmap-fonts browserplugin bzip2 cdb cdparanoia cdr chroot crypt curl dbus dri dv dvd dvdread eds emboss encode exif expat fam ffmpeg firefox flac foomaticdb fortran gd gdbm gif glut gnome gnutls gpm gstreamer gtk gtk2 hal howl idn imagemagick imlib irssi java javascript jpeg lame lcms libg++ libwww live logrotate mad matroska mikmod mjpeg mmx mmxext mng motif mozilla mp3 mpeg mplayer nautilus ncurses network nls nptl nsplugin numeric nvidia offensive ogg oggvorbis openal opengl oss pam pcre pdflib perl pic png python quicktime readline real recode sdl shorten spell sse sse2 ssl symlink tcpd tiff truetype truetype-fonts type1-fonts udev unicode usb vcd vidix vorbis win32codecs wxwindows xchat xine xml xml2 xv xvid zlib elibc_glibc kernel_linux linguas_lt userland_GNU" Unset: ASFLAGS, CTARGET, LANG, LDFLAGS, PORTDIR_OVERLAY
I've done some testing on my system which is very similar to yours. I do not have the RUNPATH issue and I don't understand why portage complains since /usr/lib should be a fine RPATH and scanelf which is used by portage has no problems with gp on my system [markus@fenris] scanelf -qyRF '%t %p' /usr/bin/gp-2.1 Could you please try running the above command on your system and report back! The textrel/executable stack are caused by -O3 as far as I can tell. Could you please try recompiling with -O2 and report back. Thanks, Markus
That command didn't return anything: UFO martian # scanelf -qyRF '%t %p' /usr/bin/gp-2.1 UFO martian # And when I tryed to compile pari with -O2 it returned that error again.. >>> emerge (1 of 16) sci-mathematics/pari-2.1.7 to / >>> checksums files ;-) pari-2.1.5-r4.ebuild >>> checksums files ;-) pari-2.1.6.ebuild >>> checksums files ;-) pari-2.1.7.ebuild >>> checksums files ;-) files/docs.patch >>> checksums files ;-) files/digest-pari-2.1.5-r4 >>> checksums files ;-) files/wrong_functype.patch >>> checksums files ;-) files/digest-pari-2.1.6 >>> checksums files ;-) files/digest-pari-2.1.7 >>> checksums files ;-) files/wrong_functype-r1.patch >>> checksums src_uri ;-) pari-2.1.7.tgz >>> Unpacking source... >>> Unpacking pari-2.1.7.tgz to /var/tmp/portage/pari-2.1.7/work * Applying docs.patch ... [ ok ]>>> Source unpacked. >>> Compiling source in /var/tmp/portage/pari-2.1.7/work/pari-2.1.7 ... i686-pc-linux-gnu-as i686-pc-linux-gnu-ld i686-pc-linux-gnu-gcc i686-pc-linux-gnu-g++ * Building for i686-linux true Configuring pari-2.1.7 (STABLE) Checking echo to see how to suppress newlines... ...using -n. Looking for some tools first ... ...ld is /usr/bin/ld ...zcat is /bin/zcat ...gzip is /bin/gzip ...ranlib is /usr/bin/ranlib ...perl is /usr/bin/perl ...I could not find emacs. Building for architecture: i686 running linux (ix86 kernel) Checking for optional libraries and headers... ...Found libreadline in /lib ...Found libncurses in /lib ...Found GNU readline header in /usr/include/readline ...Library ncurses needed by readline GNU compiler version 3.4.5 (Gentoo 3.4.5, ssp-3.4.5-1.0, pie-8.7.9) C compiler is i686-pc-linux-gnu-gcc -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer ...Hum, this looks like GNU as Assembler is i686-pc-linux-gnu-as C PreProcessor is i686-pc-linux-gnu-gcc -E -I. Executable linker is i686-pc-linux-gnu-gcc -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer -Xlinker -export-dynamic ...Hum, this looks like GNU ld Dynamic Lib linker is /usr/bin/ld -shared -soname $(LIBPARI_SONAME) -lc -lm Given the previous choices, sizeof(long) is 4 chars. The internal word representation of a double is l[1], l[0]. ========================================================================== Checking some common types... ...Found ulong. Looking in C lib for some symbols... ...I did not find exp2. ...Found strftime. ...Found getrusage. ...Found sigrelse. ...I did not find TIOCGWINSZ. ...Found getrlimit. ...Found opendir. ...I did not find vsnprintf. ...I did not find dlopen. Try again, with -ldl this time... ...Found dlopen. Installation prefix ? [/usr] ...for architecture-independant files (share-prefix) ? [] ..."gp" executable ? [/usr/bin] ..."pari" library ? [/usr/lib] ...include files ? [/usr/include/pari] ...manual pages ? [/usr/share/man/man1] ...documentation, examples, and emacs macros ? [/usr/share/doc/pari-2.1.7] ...miscellaneous data (galois resolvents) ? [/usr/share/pari-2.1.7] Default is dynamic executable and shared library, graphic=none ========================================================================== Extracting examples/Makefile.linux-i686 Extracting Olinux-i686/Makefile Extracting Olinux-i686/../Odos/paricfg.h Extracting Olinux-i686/paricfg.h Extracting Makefile Extracting scripts and macros ...in doc ...in emacs ...in misc ========================================================================== Shall we try to build pari 2.1.7 (released) now (y/n)? [n] Ok. Type "make install" when you are ready Bye ! * Building shared library... i686-pc-linux-gnu-gcc -E -I. ../src/kernel/ix86/l0asm.c | sed -e '/^#/d' -e '/^ *#line/d' -e 's/% */%/g' > level0.s cat ../src/kernel/ix86/level0.h ../src/kernel/none/level1.h > pariinl.h i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o mp.o ../src/kernel/none/mp.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o alglin1.o ../src/basemath/alglin1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o alglin2.o ../src/basemath/alglin2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o arith1.o ../src/basemath/arith1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o arith2.o ../src/basemath/arith2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base1.o ../src/basemath/base1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base2.o ../src/basemath/base2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base3.o ../src/basemath/base3.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base4.o ../src/basemath/base4.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o base5.o ../src/basemath/base5.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o bibli1.o ../src/basemath/bibli1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o bibli2.o ../src/basemath/bibli2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch1.o ../src/basemath/buch1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch2.o ../src/basemath/buch2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch3.o ../src/basemath/buch3.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o buch4.o ../src/basemath/buch4.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o galconj.o ../src/basemath/galconj.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o gen1.o ../src/basemath/gen1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o gen2.o ../src/basemath/gen2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o gen3.o ../src/basemath/gen3.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o ifactor1.o ../src/basemath/ifactor1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o polarit1.o ../src/basemath/polarit1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o polarit2.o ../src/basemath/polarit2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o polarit3.o ../src/basemath/polarit3.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o rootpol.o ../src/basemath/rootpol.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o subgroup.o ../src/basemath/subgroup.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o trans1.o ../src/basemath/trans1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o trans2.o ../src/basemath/trans2.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o trans3.o ../src/basemath/trans3.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o elliptic.o ../src/modules/elliptic.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o galois.o ../src/modules/galois.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o kummer.o ../src/modules/kummer.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o mpqs.o ../src/modules/mpqs.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o nffactor.o ../src/modules/nffactor.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o stark.o ../src/modules/stark.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o subfield.o ../src/modules/subfield.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o thue.o ../src/modules/thue.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o anal.o ../src/language/anal.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o compat.o ../src/language/compat.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o errmsg.o ../src/language/errmsg.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o es.o ../src/language/es.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o helpmsg.o ../src/language/helpmsg.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o init.o ../src/language/init.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o sumiter.o ../src/language/sumiter.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o mpinl.o ../src/kernel/none/level1.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -fPIC -I. -I../src/headers -o kernel.o level0.s rm -f libpari.so.2.1.7 /usr/bin/ld -o libpari.so.2.1.7 -shared -soname libpari.so.1 -lc -lm kernel.o mp.o alglin1.o alglin2.o arith1.o arith2.o base1.o base2.o base3.o base4.o base5.o bibli1.o bibli2.o buch1.o buch2.o buch3.o buch4.o galconj.o gen1.o gen2.o gen3.o ifactor1.o polarit1.o polarit2.o polarit3.o rootpol.o subgroup.o trans1.o trans2.o trans3.o elliptic.o galois.o kummer.o mpqs.o nffactor.o stark.o subfield.o thue.o anal.o compat.o errmsg.o es.o helpmsg.o init.o sumiter.o mpinl.o /usr/bin/ld: warning: creating a DT_TEXTREL in object. rm -f libpari.so.1 rm -f libpari.so ln -s libpari.so.2.1.7 libpari.so.1 ln -s libpari.so.2.1.7 libpari.so * Building executables... i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/language -I/usr/include -o gp.o ../src/gp/gp.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/graph -o gp_init.o ../src/gp/gp_init.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/language -I/usr/include -o gp_rl.o ../src/gp/gp_rl.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -o highlvl.o ../src/gp/highlvl.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -o whatnow.o ../src/gp/whatnow.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -o plot.o ../src/graph/plotnull.c i686-pc-linux-gnu-gcc -c -O2 -march=pentium4 -pipe -fomit-frame-pointer -DGCC_INLINE -I. -I../src/headers -I../src/graph -o plotport.o ../src/graph/plotport.c rm -f gp-dyn i686-pc-linux-gnu-gcc -o gp-dyn -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer -Xlinker -export-dynamic gp.o gp_init.o gp_rl.o highlvl.o whatnow.o plot.o plotport.o -Xlinker -rpath -Xlinker /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686:/usr/lib: -L/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686 -L/lib -lreadline -lncurses -L/usr/lib -lpari -ldl -lm rm -f ../gp ln -s Olinux-i686/gp-dyn ../gp make: `../gp' is up to date. >>> Source compiled. >>> Test phase [not enabled]: sci-mathematics/pari-2.1.7 >>> Install pari-2.1.7 into /var/tmp/portage/pari-2.1.7/image/ category sci-mathematics cd Olinux-i686; make install make[1]: Entering directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686' mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/lib rm -f /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.2.1.7 ../config/install libpari.so.2.1.7 /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.2.1.7 rm -f /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.1 rm -f /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so ln -s libpari.so.2.1.7 /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so.1 ln -s libpari.so.2.1.7 /var/tmp/portage/pari-2.1.7/image//usr/lib/libpari.so mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/include/pari ../config/install -m 644 paricfg.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari for i in pariinl; do \ ../config/install -m 644 $i.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari; done for i in pari paritype paricast paricom parierr parigen paristio parisys pariport paridecl; do \ ../config/install -m 644 ../src/headers/$i.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari; done rm -f /var/tmp/portage/pari-2.1.7/image//usr/include/pari/genpari.h ln -s pari.h /var/tmp/portage/pari-2.1.7/image//usr/include/pari/genpari.h mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/bin rm -f /var/tmp/portage/pari-2.1.7/image//usr/bin/gp-2.1 /var/tmp/portage/pari-2.1.7/image//usr/bin/gp i686-pc-linux-gnu-gcc -o /var/tmp/portage/pari-2.1.7/image//usr/bin/gp-2.1 -O3 -DGCC_INLINE -Wall -Wno-implicit -fomit-frame-pointer -Xlinker -export-dynamic gp.o gp_init.o gp_rl.o highlvl.o whatnow.o plot.o plotport.o -Xlinker -rpath -Xlinker /usr/lib: -L/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686 -L/lib -lreadline -lncurses -L/usr/lib -lpari -ldl -lm strip /var/tmp/portage/pari-2.1.7/image//usr/bin/gp-2.1 ln -s gp-2.1 /var/tmp/portage/pari-2.1.7/image//usr/bin/gp mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 ../config/install -m 644 ../doc/gphelp.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 ../config/install -m 644 ../doc/gp.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 rm -f /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1/pari.1 ln -s gp.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1/pari.1 mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/AUTHORS /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Announce.2.1 /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/CHANGES /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/COMPAT /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/COPYING /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/CVS.txt /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/MACHINES /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/NEW /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/README /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 ../config/install -m 644 /var/tmp/portage/pari-2.1.7/work/pari-2.1.7/TODO /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7 mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc /var/tmp/portage/pari-2.1.7/image//usr/bin ../config/install ../misc/tex2mail /var/tmp/portage/pari-2.1.7/image//usr/bin ../config/install -m 644 ../doc/tex2mail.1 /var/tmp/portage/pari-2.1.7/image//usr/share/man/man1 ../config/install -m 644 ../misc/README /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/color.dft /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/gpalias /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install ../misc/gpflog /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/gprc.dft /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/new.dic /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install -m 644 ../misc/pari.xpm /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc ../config/install ../misc/xgp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/misc mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/pari-2.1.7 for f in ../data/*; do ../config/install -m 644 $f /var/tmp/portage/pari-2.1.7/image//usr/share/pari-2.1.7; done 2>/dev/null mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/bin /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cd ../doc; make all make[2]: Entering directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/doc' rm -f wantpdfoutput rm -f users.std; tex users; /bin/sh: tex: command not found make[2]: *** [users.dvi] Error 127 make[2]: Leaving directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/doc' make[1]: [install-doc] Error 2 (ignored) ../config/install ../doc/gphelp /var/tmp/portage/pari-2.1.7/image//usr/bin ../config/install -m 644 ../doc/Makefile /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/translations /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/appa.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/appb.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/appc.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/paricfg.tex.in /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/parimacro.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/pdfmacs.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/refcard.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/tutorial.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/users.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch1.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch2.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch3.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch4.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/usersch5.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/paricfg.tex /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc ../config/install -m 644 ../doc/users.dvi /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/users.dvi': No such file or directory ../config/install -m 644 ../doc/tutorial.dvi /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/tutorial.dvi': No such file or directory ../config/install -m 644 ../doc/refcard.dvi /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/refcard.dvi': No such file or directory ../config/install -m 644 ../doc/refcard.ps /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/doc cp: cannot stat `../doc/refcard.ps': No such file or directory mkdir -p /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/EXPLAIN /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/Inputrc /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/Makefile /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/bench.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/cl.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/classno.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/contfrac.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/lucas.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/matexp.c /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/rho.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/squfof.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples ../config/install -m 644 ../examples/taylor.gp /var/tmp/portage/pari-2.1.7/image//usr/share/doc/pari-2.1.7/examples make[1]: Leaving directory `/var/tmp/portage/pari-2.1.7/work/pari-2.1.7/Olinux-i686' man: gzipping man page: gp.1 gzipping man page: tex2mail.1 fixing man page symlink: pari.1.gz removing old symlink: pari.1 gzipping man page: gphelp.1 prepallstrip: strip: i686-pc-linux-gnu-strip --strip-unneeded /usr/bin/gp-2.1 /usr/lib/libpari.so.2.1.7 QA Notice: the following files contain insecure RUNPATH's Please file a bug about this at http://bugs.gentoo.org/ For more information on this issue, kindly review: http://bugs.gentoo.org/81745 /usr/lib: usr/bin/gp-2.1 QA Notice: the following files contain runtime text relocations Text relocations force the dynamic linker to perform extra work at startup, waste system resources, and may pose a security risk. On some architectures, the code may not even function properly, if at all. TEXTREL usr/lib/libpari.so.2.1.7 QA Notice: the following files contain executable stacks Files with executable stacks will not work properly (or at all!) on some architectures/operating systems. A bug should be filed at http://bugs.gentoo.org/ to make sure the file is fixed. RWX --- --- usr/lib/libpari.so.2.1.7 !!! ERROR: sci-mathematics/pari-2.1.7 failed. !!! Function dyn_install, Line 1094, Exitcode 0 !!! Aborting due to serious QA concerns with RUNPATH/RPATH !!! If you need support, post the topmost build error, NOT this status message. And that command didn't return anything again: UFO martian # scanelf -qyRF '%t %p' /usr/bin/gp-2.1 UFO martian #
Could you please post the content of your /etc/ld.so.conf file! Somehow /usr/lib must be missing since scanelf complains about it. BTW: Before I posted the wrong scanelf command. It should have been scanelf -qyRF '%r %p'. Sorry about that!
Ok. UFO martian # cat /etc/ld.so.conf # ld.so.conf autogenerated by env-update; make all changes to # contents of /etc/env.d directory /usr/local/lib //usr/lib/opengl/nvidia/lib /usr/i686-pc-linux-gnu/lib /usr/lib/gcc/i686-pc-linux-gnu/3.4.5 /usr/lib/mozilla /usr/lib/openmotif-2.2 /opt/sun-jdk-1.4.2.10/jre/lib/i386/ /opt/sun-jdk-1.4.2.10/jre/lib/i386/native_threads/ /opt/sun-jdk-1.4.2.10/jre/lib/i386/classic/ /opt/sun-jdk-1.4.2.10/jre/lib/i386/server/ /usr/lib/nspr /usr/lib/nss /usr/games/lib /usr/lib/fltk-1.1 /usr/lib/libstdc++-v3/ UFO martian # And I doesn't have /usr/bin/gp-2.1, and I think because pari isn't completely installed and portage didn't install that bin. The command reports nothing, as in the previous comment.
Ahh:) So you actually don't have /usr/lib in /etc/ld.so.conf and that's why scanelf is unhappy. Please re-run env-update and see if this brings /usr/lib back into /etc/ld.so.conf. Thanks, Markus
No, it doesn't... UFO martian # env-update >>> Regenerating /etc/ld.so.cache... UFO martian # cat /etc/ld.so.conf # ld.so.conf autogenerated by env-update; make all changes to # contents of /etc/env.d directory /usr/local/lib //usr/lib/opengl/nvidia/lib /usr/i686-pc-linux-gnu/lib /usr/lib/gcc/i686-pc-linux-gnu/3.4.5 /usr/lib/mozilla /usr/lib/openmotif-2.2 /opt/sun-jdk-1.4.2.10/jre/lib/i386/ /opt/sun-jdk-1.4.2.10/jre/lib/i386/native_threads/ /opt/sun-jdk-1.4.2.10/jre/lib/i386/classic/ /opt/sun-jdk-1.4.2.10/jre/lib/i386/server/ /usr/lib/nspr /usr/lib/nss /usr/games/lib /usr/lib/fltk-1.1 /usr/lib/libstdc++-v3/ UFO martian #
Hi Ernestas, Summarizing, it looks to me like the insecure RUNPATH issues with pari are not due to a problem with that package itself but rather due to the fact that /usr/lib is missing from your /etc/ld.so.conf. Unfortunately, I am currently at a loss why this is so and I have cc'ed the portage folks hoping that they can shed some light on this. Thanks, Markus
Yes you miss critical things in your /etc/ld.so.conf, probably due to missing /etc/env.d files : /lib /usr/lib This is not a security issue, reassigning temporarily to sci, feel free to reassign to someone else when you find the best man for the job.
uhh, no first off, /lib and /usr/lib are not required to be in ld.so.conf (and the fact that they are placed there annoys me, but that's a diff story) scanelf auto inserts /lib /usr/lib and /usr/local/lib in case ld.so.conf does not contain those values if you read the output, it says: /usr/lib: usr/bin/gp-2.1 that means gp-2.1 has a rpath of "/usr/lib" *and* "" the "" rpath means that gp-2.1 will search in $PWD for libs
Created attachment 77608 [details, diff] patch for pari-2.1.7 ebuild to remove insecure RUNPATHS
Created attachment 77609 [details, diff] patch to remove executable stack
@SpanKY: Thanks a lot for the clarification. That was very helpful:) @ Ernestas: I have attached a patch for the pari-2.1.7 ebuild as well as a patch file that take care of the insecure RUNPATHS and the executable stack (the TEXTRELS are still there at the moment). Please give it a try and report back. Thanks, Markus
I also received this message on a couple of systems. So far it seems to be affecting very old installs only. If anyone can give me a way of reliably finding out the install date and medium (which release was used). I would be happy to test it out. strip: i686-pc-linux-gnu-strip --strip-unneeded usr/bin/gp-2.1 usr/lib/libpari.so.2.1.7 making executable: /usr/lib/libpari.so.2.1.7 QA Notice: the following files contain insecure RUNPATH's Please file a bug about this at http://bugs.gentoo.org/ For more information on this issue, kindly review: http://bugs.gentoo.org/81745 /usr/lib: usr/bin/gp-2.1 !!! ERROR: sci-mathematics/pari-2.1.7 failed. !!! Function dyn_install, Line 1057, Exitcode 0 !!! Insecure binaries detected
Ok, thank's for these patches, Markus. Everything emerged fine, no warnings. Robert, my system is about half year old. I built it using 2005.0 CD.
Created attachment 77723 [details, diff] updated patch for pari-2.1.7.ebuild Hi Ernestas, Thanks for testing! Unfortunately, my previous patch has the problem that gp won't link properly unless libpari is already installed on the system, i.e. it will break on new installs. The updated patch seems to work fine for me but I'd appreciate if you'd give it a spin as well. It would be great if you could also check if pari builds properly for a new install, i.e. after unmerging your previous pari install (you can back it up with quickpkg first). If it works I'll commit the changes into -r1. Thanks, Markus
Ok, thank's for fixing it, pari-2.1.7 emerged fine with your second patch.
@ Ernestas: Thank you very much for testing! I've just commited pari-2.1.7-r1 to the tree which should fix the insecure runpaths and the executable stack on x86. Could we move this revision back into the stable tree? Thanks, Markus
Please move to the stable tree! It's been over 3 weeks since this issue was fixed and having it stable would've saved me (and, I expect, others) lots of time not having to read through all of bug #81745 and this one.
*** Bug 123557 has been marked as a duplicate of this bug. ***
hey people what about put pari-2.1.7-r1 as stable ?
arches please test and mark stable, thank you
(In reply to comment #21) > arches please test and mark stable, thank you > sparc stable.
stable on ppc
Looks fine on alpha. Alpha'lized!
Stable on amd64.
stable on hppa
x86 done
I just came across this bug - dev-perl/math-pari was never bumped to reflect a hard dep against -r1. Do we need to?
(In reply to comment #28) > I just came across this bug - dev-perl/math-pari was never bumped to reflect a > hard dep against -r1. Do we need to? > it seems done now, i think this bug can be closed with noglsa.
And another one Raphael.
