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Bug 946735

Summary: dev-libs/glib-2.80.5-r1: g-ir-compiler: error while loading shared libraries: libgirepository-1.0.so.1: cannot open shared object file: No such file or directory
Product: Gentoo Linux Reporter: Alexander Tsoy <alexander>
Component: Current packagesAssignee: Gentoo Linux Gnome Desktop Team <gnome>
Status: RESOLVED FIXED    
Severity: normal CC: alexander, anton.wd, gabifalk, mingdao, razamatan, sam
Priority: Normal Keywords: PATCH, PullRequest
Version: unspecified   
Hardware: All   
OS: Linux   
See Also: https://github.com/gentoo/gentoo/pull/39807
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: glib-2.80.5-r1:20241221-092821.log.gz
glib-2.80.5-r1.patch
glib-2.80.5-r1.patch

Description Alexander Tsoy 2024-12-21 09:46:12 UTC
Created attachment 914589 [details]
glib-2.80.5-r1:20241221-092821.log.gz

FAILED: girepository/introspection/GLib-2.0.typelib 
/var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../bin/g-ir-compiler girepository/introspection/GLib-2.0.gir --output girepository/introspection/GLib-2.0.typelib --includedir=/var/tmp/portage/dev-libs/glib-2.80.5-r1/work/glib-2.80.5-abi_x86_64.amd64/girepository/introspection --includedir=/var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../share/gir-1.0
/var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../bin/g-ir-compiler: error while loading shared libraries: libgirepository-1.0.so.1: cannot open shared object file: No such file or directory
ninja: build stopped: subcommand failed.

$ emerge --info dev-libs/glib
Portage 3.0.66.1 (python 3.12.8-final-0, default/linux/amd64/23.0/systemd, gcc-13, glibc-2.40-r5, 6.6.66-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-6.6.66-gentoo-x86_64-Intel_Xeon_Processor_-Skylake,_IBRS,_no_TSX-with-glibc2.40
KiB Mem:     3919212 total,    599108 free
KiB Swap:    2097148 total,   2091516 free
Timestamp of repository gentoo: Sat, 21 Dec 2024 09:00:00 +0000
Head commit of repository gentoo: 3f9521b3168fde9b5feb2b24e4d86ae7725dd254
Head commit of repository puleglot: 226890a9ba1e4fafae7481dc9d0ec730c4034de7

sh dash 0.5.12
ld GNU ld (Gentoo 2.43 p3) 2.43.1
app-misc/pax-utils:        1.3.8::gentoo
app-shells/bash:           5.2_p37::gentoo
dev-build/autoconf:        2.72-r1::gentoo
dev-build/automake:        1.16.5-r2::gentoo
dev-build/cmake:           3.30.6::gentoo
dev-build/libtool:         2.4.7-r4::gentoo
dev-build/make:            4.4.1-r100::gentoo
dev-build/meson:           1.5.2::gentoo
dev-lang/perl:             5.40.0::gentoo
dev-lang/python:           3.12.8::gentoo
dev-lang/rust-bin:         1.81.0-r101::gentoo, 1.82.0-r101::gentoo
sys-apps/baselayout:       2.17::gentoo
sys-apps/sandbox:          2.39::gentoo
sys-apps/systemd:          256.7::gentoo
sys-devel/binutils:        2.43-r2::gentoo
sys-devel/binutils-config: 5.5.2::gentoo
sys-devel/gcc:             13.3.1_p20241115::gentoo
sys-devel/gcc-config:      2.11::gentoo
sys-kernel/linux-headers:  6.6-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.40-r5::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 3
    sync-rsync-verify-jobs: 2
    sync-rsync-verify-metamanifest: yes

puleglot
    location: /var/db/repos/puleglot
    sync-type: git
    sync-uri: https://puleglot.ru/git/gentoo/puleglot-overlay.git
    masters: gentoo
    priority: 900
    volatile: False

local
    location: /usr/local/portage
    masters: gentoo
    priority: 1000
    volatile: True

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=x86-64-v2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d"
CXXFLAGS="-O2 -march=x86-64-v2 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--dynamic-deps=n --with-bdeps=y --binpkg-respect-use=y --ask-enter-invalid"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -march=x86-64-v2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live buildsyspkg clean-logs compress-build-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync merge-wait multilib-strict network-sandbox news parallel-fetch pid-sandbox pkgdir-index-trusted preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=x86-64-v2 -pipe"
GENTOO_MIRRORS="http://mirror.hetzner.de/gentoo/ http://distfiles.gentoo.org/"
LANG="ru_RU.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs"
LEX="flex"
MAKEOPTS="-j1"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C opt-level=2 -C target-cpu=x86-64-v2"
SHELL="/bin/bash"
USE="acl aio amd64 bash-completion bzip2 caps cet cli crypt device-mapper gdbm hardened iconv icu idn ipv6 libtirpc lz4 lzma maildir modules-compress multilib ncurses nls openmp pam pcre pic pie readline sasl seccomp ssl ssp systemd test-rust tls udev unicode urandom vim-syntax xattr xtpax xz zlib zstd" ABI_X86="64" ADA_TARGET="gcc_12" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax navcom oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tsip tripmate tnt ublox" GRUB_PLATFORMS="pc" GUILE_SINGLE_TARGET="3-0" GUILE_TARGETS="3-0" INPUT_DEVICES="libinput" KERNEL="linux" L10N="ru en en-US" LCD_DEVICES="bayrad cfontz glk hd44780 lb216 lcdm001 mtxorb text" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-2" POSTGRES_TARGETS="postgres16" PYTHON_SINGLE_TARGET="python3_12" PYTHON_TARGETS="python3_12" RUBY_TARGETS="ruby32" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipp2p iface geoip fuzzy condition tarpit sysrq proto logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, PYTHONPATH, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS

=================================================================
                        Package Settings
=================================================================

dev-libs/glib-2.78.6::gentoo was built with the following:
USE="elf mime xattr -dbus -debug -gtk-doc (-selinux) -static-libs -sysprof -systemtap -test -utils" ABI_X86="(64) -32 (-x32)"
Comment 1 Alexander Tsoy 2024-12-21 10:12:43 UTC
This is during update from glib-2.78.6 to 2.80.5-r1. If I manually install dev-libs/gobject-introspection-1.78.1-r2, then build succeeds.

So there is probably a circular dependency between dev-libs/glib[introspection] and dev-libs/gobject-introspection. I can't see how dev-libs/glib-2.80.5-r1[introspection] can be installed on a fresh system.
Comment 2 Anton Kuleshov 2024-12-21 10:13:25 UTC
Same here. Seems like because of new default use flag "introspection" and missing dependency from dev-libs/gobject-introspection (cant open file libgirepository-1.0.so which is part of dev-libs/gobject-introspection).

Workaround:
emerge -1 "<dev-libs/gobject-introspection-common-1.80" "<dev-libs/gobject-introspection-1.80"
emerge -1 dev-libs/gobject-introspection-common dev-libs/gobject-introspection-common dev-libs/glib
Comment 3 Alexander Tsoy 2024-12-21 10:42:44 UTC
(In reply to Alexander Tsoy from comment #1)
> So there is probably a circular dependency between
> dev-libs/glib[introspection] and dev-libs/gobject-introspection. I can't see
> how dev-libs/glib-2.80.5-r1[introspection] can be installed on a fresh
> system.
Ah, I'm wrong. Without gobject-introspection installed glib builds and installs it's own copy of it in a temp dir. But for some reason dynamic linking is broken.
Comment 4 Alexander Tsoy 2024-12-21 11:00:16 UTC
Created attachment 914591 [details]
glib-2.80.5-r1.patch

This fixes this issue for me
Comment 5 Alexander Tsoy 2024-12-21 11:13:28 UTC
Created attachment 914592 [details]
glib-2.80.5-r1.patch
Comment 6 Holger Hoffstätte 2024-12-21 13:44:00 UTC
*** Bug 946781 has been marked as a duplicate of this bug. ***
Comment 7 razamatan 2024-12-21 14:03:59 UTC
also had issues with upgrading from 2.78.6 to 2.80.5-r1 but without the nice compilation error message (had lots of symbol reference issues, see attached log).  i tried this b/c i also saw the introspection use flag being enabled, so i tried the patch suggested by alexander.  it fixes it for me.
Comment 8 razamatan 2024-12-21 14:12:45 UTC
(In reply to razamatan from comment #7)
> also had issues with upgrading from 2.78.6 to 2.80.5-r1 but without the nice
> compilation error message (had lots of symbol reference issues, see attached
> log).  i tried this b/c i also saw the introspection use flag being enabled,
> so i tried the patch suggested by alexander.  it fixes it for me.

looking at the saved build log carefully, it actually did have the same failure:

[626/638] /var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../bin/g-ir-compiler girepository/introspection/GLib-2.0.gir --output girepository/introspection/GLib-2.0.typelib --includedir=/var/tmp/portage/dev-libs/glib-2.80.5-r1/work/glib-2.80.5-abi_x86_64.amd64/girepository/introspection --includedir=/var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../share/gir-1.0
FAILED: girepository/introspection/GLib-2.0.typelib                                                                                 /var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../bin/g-ir-compiler girepository/introspection/GLib-2.0.gir --output girepository/introspection/GLib-2.0.typelib --includedir=/var/tmp/portage/dev-libs/glib-2.80.5-r1/work/glib-2.80.5-abi_x86_64.amd64/girepository/introspection --includedir=/var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../share/gir-1.0/var/tmp/portage/dev-libs/glib-2.80.5-r1/temp/usr/lib64/pkgconfig/../../bin/g-ir-compiler: error while loading shared libraries: libgirepository-1.0.so.1: cannot open shared object file: No such file or directory
Comment 9 Larry the Git Cow gentoo-dev 2024-12-21 16:22:59 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6ed35622d333954fedc11ed080bfa3dd29c74f3a

commit 6ed35622d333954fedc11ed080bfa3dd29c74f3a
Author:     Gabi Falk <gabifalk@gmx.com>
AuthorDate: 2024-12-21 13:39:00 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-12-21 16:21:22 +0000

    dev-libs/glib: 2.80.5-r1: Fix gobject-introspection bootstrap
    
    Closes: https://bugs.gentoo.org/946735
    Signed-off-by: Gabi Falk <gabifalk@gmx.com>
    Closes: https://github.com/gentoo/gentoo/pull/39807
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-libs/glib/glib-2.80.5-r1.ebuild | 3 +++
 1 file changed, 3 insertions(+)

Additionally, it has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cc389de277b47284868470abf7539e7fdf04c80d

commit cc389de277b47284868470abf7539e7fdf04c80d
Author:     Sam James <sam@gentoo.org>
AuthorDate: 2024-12-21 16:22:27 +0000
Commit:     Sam James <sam@gentoo.org>
CommitDate: 2024-12-21 16:22:27 +0000

    dev-libs/glib: forward-port LD_LIBRARY_PATH fix to 2.82.4-r1 too
    
    Bug: https://bugs.gentoo.org/946735
    Signed-off-by: Sam James <sam@gentoo.org>

 dev-libs/glib/glib-2.82.4-r1.ebuild | 3 +++
 1 file changed, 3 insertions(+)