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Bug 944195

Summary: sci-biology/raxml-8.2.13 - [ncurses-6.5] [gcc-15] rmq.h: error: two or more data types in declaration specifiers
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: CONFIRMED ---    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 880545    
Attachments: emerge-info.txt
emerge-history.txt.xz
environment
etc.clang.tar.xz
etc.portage.tar.xz
logs.tar.xz
qlist-info.txt.xz
sci-biology:raxml-8.2.13:20241120-180123.log
temp.tar.xz

Description Toralf Förster gentoo-dev 2024-11-20 18:11:40 UTC
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -msse3 -pthread -D_GNU_SOURCE   -D__SIM_SSE3 -D_USE_PTHREADS  -c -o topologies.o topologies.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -msse3 -pthread -D_GNU_SOURCE   -D__SIM_SSE3 -D_USE_PTHREADS  -c -o parsePartitions.o parsePartitions.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -msse3 -pthread -D_GNU_SOURCE   -D__SIM_SSE3 -D_USE_PTHREADS  -c -o optimizeModel.o optimizeModel.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -msse3 -pthread -D_GNU_SOURCE   -D__SIM_SSE3 -D_USE_PTHREADS  -c -o treeIO.o treeIO.c
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -msse3 -pthread -D_GNU_SOURCE   -D__SIM_SSE3 -D_USE_PTHREADS  -c -o bipartitionList.o bipartitionList.c
In file included from bipartitionList.c:46:
rmq.h:13:13: error: two or more data types in declaration specifiers
   13 | typedef int bool;
      |             ^~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_desktop_plasma_systemd-20241112-111005

  UNMASKED:
  <sys-devel/gcc-15.0.9999:15
    Issues involving opaque types / incomplete typedefs should block bug 930805
  >=sys-libs/ncurses-6.5

  The attached etc.portage.tar.xz has all details.
  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-15 *
clang version 19.1.4
llvm-config: 19.1.4
Python 3.12.7
go version go1.23.3 linux/amd64
Available Ruby profiles:
  [1]   ruby32 (with Rubygems)
  [2]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.81.0
  [2]   rust-bin-1.82.0
  [3]   rust-1.82.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.13_p11 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.5_p11 [openjdk-bin-21]
3)	Eclipse Temurin JDK 8.432_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21  system-vm


  HEAD of ::gentoo
commit f6d75bd6df21da95b6a72bd3974fe29a7e29305a
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Nov 20 17:19:17 2024 +0000

    2024-11-20 17:19:17 UTC

emerge -qpvO =sci-biology/raxml-8.2.13
[ebuild  N    ] sci-biology/raxml-8.2.13  USE="threads" CPU_FLAGS_X86="sse3"
Comment 1 Toralf Förster gentoo-dev 2024-11-20 18:11:41 UTC
Created attachment 910822 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-11-20 18:11:42 UTC
Created attachment 910823 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2024-11-20 18:11:43 UTC
Created attachment 910824 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-11-20 18:11:44 UTC
Created attachment 910825 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-11-20 18:11:45 UTC
Created attachment 910826 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-11-20 18:11:46 UTC
Created attachment 910827 [details]
logs.tar.xz
Comment 7 Toralf Förster gentoo-dev 2024-11-20 18:11:47 UTC
Created attachment 910828 [details]
qlist-info.txt.xz
Comment 8 Toralf Förster gentoo-dev 2024-11-20 18:11:48 UTC
Created attachment 910829 [details]
sci-biology:raxml-8.2.13:20241120-180123.log
Comment 9 Toralf Förster gentoo-dev 2024-11-20 18:11:48 UTC
Created attachment 910830 [details]
temp.tar.xz