| Summary: | sci-biology/dialign-tx-1.0.2-r2 - [libtool] [gcc-15] museq.c: error: type of simple_aligner does not match original declaration [-Werror=lto-type-mismatch] | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 618550 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.clang.tar.xz etc.portage.tar.xz qlist-info.txt.xz sci-biology:dialign-tx-1.0.2-r2:20241006-221256.log temp.tar.xz |
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Created attachment 905034 [details]
emerge-info.txt
Created attachment 905035 [details]
emerge-history.txt
Created attachment 905036 [details]
environment
Created attachment 905037 [details]
etc.clang.tar.xz
Created attachment 905038 [details]
etc.portage.tar.xz
Created attachment 905039 [details]
qlist-info.txt.xz
Created attachment 905040 [details]
sci-biology:dialign-tx-1.0.2-r2:20241006-221256.log
Created attachment 905041 [details]
temp.tar.xz
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make: Leaving directory '/var/tmp/portage/sci-biology/dialign-tx-1.0.2-r2/work/DIALIGN-TX_1.0.2/source' make: Entering directory '/var/tmp/portage/sci-biology/dialign-tx-1.0.2-r2/work/DIALIGN-TX_1.0.2/source' rm -f ./museq x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto -o ./museq \ ./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o \ -pipe -Wall -lm museq.c:58:13: error: type of simple_aligner does not match original declaration [-Werror=lto-type-mismatch] 58 | extern int simple_aligner(struct seq_col *scol, struct diag_col *dcol, | ^ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_hardened-20241003-135501 UNMASKED: /etc/portage/package.unmask/60gcc:<sys-devel/gcc-15.0.9999:15 Requested by sam The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-15 * clang/llvm (if any): clang version 19.1.1 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/19/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/19 19.1.1 Python 3.12.7 Available Ruby profiles: [1] ruby32 (with Rubygems) [2] ruby33 (with Rubygems) * Available Rust versions: [1] rust-bin-1.81.0 * The following VMs are available for generation-2: *) Eclipse Temurin JDK 21.0.4_p7 [openjdk-bin-21] Available Java Virtual Machines: [1] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.2.8 php cli (if any): [1] php8.3 * go version go1.23.1 linux/amd64 HEAD of ::gentoo commit f43ea290d28ccce3546e4192765c972f2e4dc4a8 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sun Oct 6 20:03:19 2024 +0000 2024-10-06 20:03:18 UTC emerge -qpvO =sci-biology/dialign-tx-1.0.2-r2 [ebuild N ] sci-biology/dialign-tx-1.0.2-r2