| Summary: | sci-biology/seaview-4.6-r1 - [ncurses-6.5] [meson] [libtool] [gcc-15] treedraw.cxx: error: type struct branche violates the C++ One Definition Rule [-Werror=odr] | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 618550 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.clang.tar.xz etc.portage.tar.xz qlist-info.txt.xz sci-biology:seaview-4.6-r1:20240930-184102.log |
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Created attachment 904377 [details]
emerge-info.txt
Created attachment 904378 [details]
emerge-history.txt
Created attachment 904379 [details]
environment
Created attachment 904380 [details]
etc.clang.tar.xz
Created attachment 904381 [details]
etc.portage.tar.xz
Created attachment 904382 [details]
qlist-info.txt.xz
Created attachment 904383 [details]
sci-biology:seaview-4.6-r1:20240930-184102.log
The file size of ./files/temp.tar.xz is too big (2.1M) for an upload. For few weeks the link http://tinderbox.zwiebeltoralf.de:31560/23.0_desktop_systemd-20240927-085502/var/tmp/tb/issues/20240930-184111-sci-biology_seaview-4.6-r1/files/temp.tar.xz is valid. |
too long lines were shrinked: x86_64-pc-linux-gnu-gcc -c -O2 -pipe -march=native -fno-diagnostics-color -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto -O2 -pipe -march=native -fno-diagnostics-color -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto -Dunix -Icsrc csrc/phyml_util.c csrc/phyml_util.c: In function Warn_And_Exit: csrc/phyml_util.c:47:9: warning: ignoring return value of fscanf declared with attribute warn_unused_result [-Wunused-result] 47 | fscanf(stdin,"%c",&c); | ^~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-g++ -o seaview -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -Werror=lto-type-mismatch -Werror=strict-aliasing -Werror=odr -flto seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o treedraw.cxx:40:16: error: type struct branche violates the C++ One Definition Rule [-Werror=odr] 40 | typedef struct branche { /* une branche definie par ses deux extremites */ | ^ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_desktop_systemd-20240927-085502 UNMASKED: /etc/portage/package.unmask/60gcc:<sys-devel/gcc-15.0.9999:15 Requested by sam Please re-assign to ztrawhcse@ if you cannot reproduced it with regular meson. /etc/portage/package.unmask/50unstable:<dev-build/meson-9999 Issues involving opaque types / incomplete typedefs should block bug 930805 /etc/portage/package.unmask/50unstable:>=sys-libs/ncurses-6.5 The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-15 * clang/llvm (if any): clang version 19.1.0 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/19/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/19 19.1.0 Python 3.12.6 Available Ruby profiles: [1] ruby31 (with Rubygems) [2] ruby32 (with Rubygems) [3] ruby33 (with Rubygems) * Available Rust versions: [1] rust-bin-1.81.0 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 17.0.12_p7 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.4_p7 [openjdk-bin-21] 3) Eclipse Temurin JDK 8.422_p05 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-17 [3] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.2.8 php cli (if any): [1] php8.3 * go version go1.23.1 linux/amd64 HEAD of ::gentoo commit 981ec351959b166587d1cffc7a19a0eb860f4e9b Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Mon Sep 30 18:06:38 2024 +0000 2024-09-30 18:06:37 UTC emerge -qpvO =sci-biology/seaview-4.6-r1 [ebuild N ] sci-biology/seaview-4.6-r1 USE="xft"