| Summary: | sys-cluster/openmpi-4.1.6 - [meson-9999] /.../ld: cannot find -lpmix: No such file or directory | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Cluster Team <cluster> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | eschwartz |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://bugs.gentoo.org/show_bug.cgi?id=652432 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt.xz environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt.xz sys-cluster:openmpi-4.1.6:20240601-035849.log.xz temp.tar.xz |
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Created attachment 894833 [details]
emerge-info.txt
Created attachment 894834 [details]
emerge-history.txt.xz
Created attachment 894835 [details]
environment
Created attachment 894836 [details]
etc.clang.tar.xz
Created attachment 894837 [details]
etc.portage.tar.xz
Created attachment 894838 [details]
logs.tar.xz
Created attachment 894839 [details]
qlist-info.txt.xz
Created attachment 894840 [details]
sys-cluster:openmpi-4.1.6:20240601-035849.log.xz
Created attachment 894841 [details]
temp.tar.xz
This was one of the things I was separately working on, and didn't realize a bug was filed for it. qlist shows that this builder had sys-cluster/pmix installed -- something that was never a DEPEND or RDEPEND of openmpi. I noted this, and fixed it in parallel to this tinderbox result being found. The linked ticket is NOT fixed, because it's about file conflicts, but at least it shouldn't get linker errors now. :) commit b462e21d01293f5ac38417ff9cb4785b19d46385 Author: Eli Schwartz <eschwartz93@gmail.com> AuthorDate: Mon Jun 10 02:00:28 2024 Commit: Sam James <sam@gentoo.org> CommitDate: Fri Jun 14 02:44:43 2024 sys-cluster/openmpi: force disable building against system pmix It cannot currently work, since it lacks multilib support plus keywords. Avoid automagically depending on it, at least. Bug: https://bugs.gentoo.org/652432 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org> sys-cluster/openmpi/openmpi-4.1.6.ebuild | 2 ++ 1 file changed, 2 insertions(+) |
too long lines were shrinked: from ext3x_server_south.c:47: /usr/include/pmix_server.h:657:27: note: in a call to function PMIx_server_register_nspace 657 | PMIX_EXPORT pmix_status_t PMIx_server_register_nspace(const pmix_nspace_t nspace, int nlocalprocs, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../../../libtool --tag=CC --mode=link x86_64-pc-linux-gnu-gcc -m32 -mfpmath=sse -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -finline-functions -fno-strict-aliasing -module -avoid-version -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ld libtool: link: x86_64-pc-linux-gnu-gcc -m32 -mfpmath=sse -shared -fPIC -DPIC .libs/mca_pmix_ext3x_la-ext3x_local.o .libs/mca_pmix_ext3x_la-ext3x.o .libs/mca_pmix_ext3x_la-ext3x_client.o .libs/mca_pmix_ext3x_la-ext3x_component.o .libs/mca_pmix_ext3x_la-ext3x_server_north.o .libs/mca_pmix_ext3x_la-e /usr/libexec/gcc/x86_64-pc-linux-gnu/ld: cannot find -lpmix: No such file or directory collect2: error: ld returned 1 exit status make[2]: *** [Makefile:1888: mca_pmix_ext3x.la] Error 1 ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_hardened_systemd_abi32+64-20240525-075004 UNMASKED: <dev-build/meson-9999 Please re-assign to ztrawhcse@ if you cannot reproduced it with regular meson. The attached etc.portage.tar.xz has all details. ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-14 * clang/llvm (if any): clang version 18.1.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/18/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/18 18.1.6 Python 3.11.9 Available Ruby profiles: (none found) Available Rust versions: [1] rust-bin-1.78.0 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.23_p9 [openjdk-bin-11] 2) Eclipse Temurin JDK 17.0.11_p9 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.3_p9 [openjdk-bin-21] 4) Eclipse Temurin JDK 8.412_p08 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 [4] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.2.8 php cli (if any): go version go1.22.3 linux/amd64 HEAD of ::gentoo commit 52d5e32f696806d4b92d51048e35ce1c5de2e0cd Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sat Jun 1 03:19:17 2024 +0000 2024-06-01 03:19:16 UTC emerge -qpvO sys-cluster/openmpi [ebuild N ] sys-cluster/openmpi-4.1.6 USE="cxx ipv6 -cma -cuda -fortran -libompitrace -peruse -romio -valgrind" ABI_X86="32 (64) (-x32)" OPENMPI_FABRICS="-knem -ofed" OPENMPI_OFED_FEATURES="-control-hdr-padding -dynamic-sl -rdmacm -udcm" OPENMPI_RM="-pbs (-slurm)"