| Summary: | sys-cluster/openmpi-4.1.6 fails test - /.../partial.c: error: passing argument 3 of ompi_datatype_create_contiguous from incompatible pointer type [-W | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Cluster Team <cluster> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | eschwartz, jy6x2b32pie9, th-gen |
| Priority: | Normal | Keywords: | TESTFAILURE |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 870412 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt sys-cluster:openmpi-4.1.6:20240420-215603.log.xz temp.tar.xz |
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Created attachment 891233 [details]
emerge-info.txt
Created attachment 891234 [details]
emerge-history.txt
Created attachment 891235 [details]
environment
Created attachment 891236 [details]
etc.clang.tar.xz
Created attachment 891237 [details]
etc.portage.tar.xz
Created attachment 891238 [details]
logs.tar.xz
Created attachment 891239 [details]
qlist-info.txt
Created attachment 891240 [details]
sys-cluster:openmpi-4.1.6:20240420-215603.log.xz
Created attachment 891241 [details]
temp.tar.xz
Upstream bug: https://github.com/open-mpi/ompi/issues/12466 And also https://github.com/open-mpi/ompi/issues/12169 if we decide to include openmpi-5.0.x It does indeed "just work" when updating to 5.0.3. The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=496a4f0ce86f43da3fe77ffd6c9bef2e41cf3852 commit 496a4f0ce86f43da3fe77ffd6c9bef2e41cf3852 Author: Eli Schwartz <eschwartz93@gmail.com> AuthorDate: 2024-06-10 04:05:03 +0000 Commit: Eli Schwartz <eschwartz@gentoo.org> CommitDate: 2024-07-12 05:54:15 +0000 sys-cluster/openmpi: add 5.0.3 A bunch of upstream changes occurred. In particular: - openmpi drops ALL support for 32-bit, and errors out in ./configure if you try. This follows pmix. Rip out all the multilib-minimal scaffolding. - libompitrace "was incomplete and unmaintained" and is now removed from the sources - upstream now defaults to --disable-dlopen, and configuring with libltdl enabled externally returns errors saying a non libltdl header doesn't exist. Unclear if it actually supports this - a couple dependencies can now be configured --with-*=external instead of passing paths - libibverbs handling is gone upstream and no longer makes sense to configure via USE flags (or at all): https://github.com/open-mpi/ompi/commit/59c8ab6da4276ff398453a54910c6c0fb67a153c Delayed: - heterogeneous was broken in older versions, and its USE flag is supposed to be restored. But the upstream docs still suggest it is broken. Independent of upstream rework of pmix, we take the opportunity of a version bump to build against the system pmix, resolving a longstanding bug due to openmpi publicly shipping its own pmix installation that stomps all over the global system namespace. Temporarily drop keywords which the pmix package lacks. Bug: https://bugs.gentoo.org/828123 Closes: https://bugs.gentoo.org/652432 Closes: https://bugs.gentoo.org/927828 Closes: https://bugs.gentoo.org/930362 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Eli Schwartz <eschwartz@gentoo.org> sys-cluster/openmpi/Manifest | 1 + sys-cluster/openmpi/openmpi-5.0.3.ebuild | 141 +++++++++++++++++++++++++++++++ 2 files changed, 142 insertions(+) |
too long lines were shrinked: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype -I../../opal/include -I../../ompi/include -I../../oshmem/include -I../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen -I../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype -I../../opal/include -I../../ompi/include -I../../oshmem/include -I../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen -I../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype -I../../opal/include -I../../ompi/include -I../../oshmem/include -I../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen -I../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype -I../../opal/include -I../../ompi/include -I../../oshmem/include -I../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen -I../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype -I../../opal/include -I../../ompi/include -I../../oshmem/include -I../../opal/mca/hwloc/hwloc201/hwloc/include/private/autogen -I../../opal/mca/hwloc/hwloc201/hwloc/include/hwloc /var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype/partial.c: In function 'main': /var/tmp/portage/sys-cluster/openmpi-4.1.6/work/openmpi-4.1.6/test/datatype/partial.c:89:55: error: passing argument 3 of 'ompi_datatype_create_contiguous' from incompatible pointer type [-Wincompatible-pointer-types] 89 | ompi_datatype_create_contiguous(CONT_COUNT, base, &vector); | ^~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 23.0_desktop_plasma_test-20240419-193003 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-14 * clang/llvm (if any): clang version 17.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/17/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/17 17.0.6 Python 3.11.8 Available Rust versions: [1] rust-bin-1.77.1 * php cli (if any): go version go1.22.2 linux/amd64 HEAD of ::gentoo commit a6515c83c274b3b39e8392aa83df8ef1703dc1b0 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sat Apr 20 21:49:12 2024 +0000 2024-04-20 21:49:12 UTC emerge -qpvO sys-cluster/openmpi [ebuild N ] sys-cluster/openmpi-4.1.6 USE="cxx ipv6 -cma -cuda -fortran -libompitrace -peruse -romio -valgrind" ABI_X86="(64) -32 (-x32)" OPENMPI_FABRICS="-knem -ofed" OPENMPI_OFED_FEATURES="-control-hdr-padding -dynamic-sl -rdmacm -udcm" OPENMPI_RM="-pbs (-slurm)"