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Bug 929069

Summary: sci-chemistry/molden-6.9-r1 - /.../rots.h:13329:(.text+<snip>): undefined reference to memmove@GLIBC_2.2.5
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo musl team <musl>
Status: CONFIRMED ---    
Severity: normal CC: sci-chemistry
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 870412    
Attachments: emerge-info.txt
emerge-history.txt.xz
environment
etc.clang.tar.xz
etc.portage.tar.xz
qlist-info.txt.xz
sci-chemistry:molden-6.9-r1:20240409-204950.log
temp.tar.xz

Description Toralf Förster gentoo-dev 2024-04-10 18:00:43 UTC
too long lines were shrinked:

      |                                      ~~~~~~~~~~^~~~~
src/xwin.c:2027:13: note: destination object 'cmdstr' of size 1024
 2027 | static char cmdstr[MAXPATHLEN];
      |             ^~~~~~
x86_64-pc-linux-musl-gfortran -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,--defsym=__gentoo_check_ldflags__=0 -o molden src/atomdens.o src/molden.o src/above.o src/actcal.o src/basprt.o src/calc.o src/caldis.o src/calfa.o src/cntour.o src/cnvgam.o src/cnvgau.o src/convzmat.o src/cross.o 
/usr/lib/gcc/x86_64-pc-linux-musl/13/../../../../x86_64-pc-linux-musl/bin/ld: src/xwin.o: in function `AllocRot':
/var/tmp/portage/sci-chemistry/molden-6.9-r1/work/molden6.9/src/rots.h:13329:(.text+0x3209): undefined reference to `memmove@GLIBC_2.2.5'
/usr/lib/gcc/x86_64-pc-linux-musl/13/../../../../x86_64-pc-linux-musl/bin/ld: /var/tmp/portage/sci-chemistry/molden-6.9-r1/work/molden6.9/src/rots.h:13337:(.text+0x32d9): undefined reference to `memmove@GLIBC_2.2.5'
/usr/lib/gcc/x86_64-pc-linux-musl/13/../../../../x86_64-pc-linux-musl/bin/ld: src/xwin.o: in function `calgas_':

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 23.0_musl-20240403-202925

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-musl-13 *
clang/llvm (if any):
clang version 18.1.3
Target: x86_64-pc-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/18/bin
Configuration file: /etc/clang/x86_64-pc-linux-musl-clang.cfg
/usr/lib/llvm/18
18.1.3
Python 3.11.9
Available Ruby profiles:
  [1]   ruby31 (with Rubygems)
  [2]   ruby32 (with Rubygems)
  [3]   ruby33 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.77.1
  [2]   rust-1.77.1 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.22_p7 [openjdk-bin-11]
2)	Eclipse Temurin JDK 17.0.10_p7 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.2_p13 [openjdk-bin-21]
Available Java Virtual Machines:
  [1]   openjdk-bin-11 
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21  system-vm

php cli (if any):
  [1]   php8.1
  [2]   php8.3 *
go version go1.22.2 linux/amd64

  HEAD of ::gentoo
commit 704e0489014ecd1257e3dd8f7b8117c632630f89
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Apr 9 20:19:16 2024 +0000

    2024-04-09 20:19:15 UTC

emerge -qpvO sci-chemistry/molden
[ebuild  N    ] sci-chemistry/molden-6.9-r1  USE="-opengl"
Comment 1 Toralf Förster gentoo-dev 2024-04-10 18:00:44 UTC
Created attachment 890154 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2024-04-10 18:00:46 UTC
Created attachment 890155 [details]
emerge-history.txt.xz
Comment 3 Toralf Förster gentoo-dev 2024-04-10 18:00:47 UTC
Created attachment 890156 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2024-04-10 18:00:48 UTC
Created attachment 890157 [details]
etc.clang.tar.xz
Comment 5 Toralf Förster gentoo-dev 2024-04-10 18:00:49 UTC
Created attachment 890158 [details]
etc.portage.tar.xz
Comment 6 Toralf Förster gentoo-dev 2024-04-10 18:00:50 UTC
Created attachment 890159 [details]
qlist-info.txt.xz
Comment 7 Toralf Förster gentoo-dev 2024-04-10 18:00:51 UTC
Created attachment 890160 [details]
sci-chemistry:molden-6.9-r1:20240409-204950.log
Comment 8 Toralf Förster gentoo-dev 2024-04-10 18:00:52 UTC
Created attachment 890161 [details]
temp.tar.xz