Bug 92564

Summary:	ncbi-tools-20050429.ebuild does not respect change of CFLAGS on x86
Product:	Gentoo Linux	Reporter:	Walter Meinl <wuno>
Component:	New packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	RESOLVED FIXED
Severity:	minor	CC:	patrizio.bassi, ribosome
Priority:	High
Version:	unspecified
Hardware:	x86
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	patch for the ebuild to exchange the NCBI-CFLAGS on x86

Description Walter Meinl 2005-05-14 00:56:07 UTC

Due to changes in 'ncbi/platform/linux-x86.ncbi.mk' from "NCBI_LDFLAGS1 = -O3 -mcpu=pentiumpro NCBI_OPTFLAG = -O3 -mcpu=pentiumpro" to "NCBI_LDFLAGS1 = -O3 -mcpu=pentium4 NCBI_OPTFLAG = -O3 -mcpu=pentium4" the NCBI-Flags will not be removed leading to following outputs during compile:

i686-pc-linux-gnu-gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -O3 -mcpu=pentium4 -c -march=athlon-xp -m3dnow -O2 -pipe -fomit-frame-pointer  -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbithr.c
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.
`-mcpu=' is deprecated. Use `-mtune=' or '-march=' instead.


Reproducible: Always
Steps to Reproduce:
1. compile the new package on x86
2.
3.



Expected Results:  
removal of the original NCBI-Flags

other platform ncbi.mk files seem not to be changed (however better have a look
on them ;-))

Comment 1 Walter Meinl 2005-05-14 00:58:14 UTC

Created attachment 58854 [details, diff]
patch for the ebuild to exchange the NCBI-CFLAGS on x86

This patch fixes the 20050429.ebuild

Comment 2 Olivier Fisette (RETIRED) gentoo-dev

2005-05-16 14:23:00 UTC

Fixed. Thanks for the tip.

Comment 3 Olivier Fisette (RETIRED) gentoo-dev

2005-05-18 12:10:49 UTC

*** Bug 93060 has been marked as a duplicate of this bug. ***