Bug 923243

Summary:	sci-biology/pysam-0.21.0 installs deprecated .egg/.egg-info
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	921639
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2024-01-29 08:20:18 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/pysam-0.21.0 installs deprecated .egg/.egg-info.
Discovered on: amd64 (internal ref: gcc14_tinderbox)
System: GCC-14-SYSTEM (https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#GCC-14)

Info about the issue:
https://wiki.gentoo.org/wiki/Project:Tinderbox/Common_Issues_Helper#QA0076

Comment 1 Agostino Sarubbo gentoo-dev

2024-01-29 08:20:20 UTC

Created attachment 883539 [details]
build.log

build log and emerge --info

Comment 2 Larry the Git Cow gentoo-dev

2024-05-24 09:54:24 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a300fad43f75217ec5ca16d5262e578e0af853a9

commit a300fad43f75217ec5ca16d5262e578e0af853a9
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2024-05-24 09:54:01 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2024-05-24 09:54:01 +0000

    sci-biology/pysam: drop 0.21.0
    
    Closes: https://bugs.gentoo.org/923243
    Closes: https://bugs.gentoo.org/927872
    Closes: https://bugs.gentoo.org/929754
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/pysam/Manifest                         |  1 -
 .../pysam/files/pysam-0.21.0-cython-3.patch        | 24 --------
 sci-biology/pysam/pysam-0.21.0.ebuild              | 72 ----------------------
 3 files changed, 97 deletions(-)