| Summary: | dev-libs/igraph-0.10.4-r1 - [clang] /.../graphml.c: error: missing field expandedSize initializer [-Werror,-Wmissing-field-initializers] | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | szhorvat |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
dev-libs:igraph-0.10.4:20240101-170948.log emerge-history.txt.xz environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt.xz temp.tar.xz var.tmp.clang.tar.xz |
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Created attachment 881218 [details]
emerge-info.txt
Created attachment 881219 [details]
dev-libs:igraph-0.10.4:20240101-170948.log
Created attachment 881220 [details]
emerge-history.txt.xz
Created attachment 881221 [details]
environment
Created attachment 881222 [details]
etc.clang.tar.xz
Created attachment 881223 [details]
etc.portage.tar.xz
Created attachment 881224 [details]
logs.tar.xz
Created attachment 881225 [details]
qlist-info.txt.xz
Created attachment 881226 [details]
temp.tar.xz
Created attachment 881227 [details]
var.tmp.clang.tar.xz
clang-lld_tinderbox has reproduced this issue with version 0.10.4-r1 - Updating summary. This is a compatibility issue between igraph and libxml2 >= 2.11. It was fixed in igraph 0.10.6 in 2023 July. Why don't you update igraph in Gentoo? The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=37bd1334b41213813cb38acf46c98b1f80c5fd15 commit 37bd1334b41213813cb38acf46c98b1f80c5fd15 Author: Eli Schwartz <eschwartz93@gmail.com> AuthorDate: 2024-03-11 04:00:26 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2024-03-11 14:22:51 +0000 dev-libs/igraph: add 0.10.10 Include backported patch from upstream which fixes strict-aliasing violations. Closes: https://bugs.gentoo.org/924864 Closes: https://bugs.gentoo.org/925227 Closes: https://bugs.gentoo.org/921172 Signed-off-by: Eli Schwartz <eschwartz93@gmail.com> Signed-off-by: Sam James <sam@gentoo.org> dev-libs/igraph/Manifest | 1 + .../808c083fbe661207ee8f0fcd3be5096b5dc17d0d.patch | 35 ++++++++++++++ dev-libs/igraph/igraph-0.10.10.ebuild | 53 ++++++++++++++++++++++ 3 files changed, 89 insertions(+) |
too long lines were shrinked: [199/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/dl.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/ig [200/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/edgelist.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-l [201/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/dot.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/i [202/344] /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/graphml.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-li FAILED: src/CMakeFiles/igraph.dir/io/graphml.c.o /var/tmp/portage/dev-libs/igraph-0.10.4/temp/clang-wrappers/clang -DIGRAPH_VERIFY_FINALLY_STACK=0 -DNCOMPLEX -DPRPACK_IGRAPH_SUPPORT=1 -Digraph_EXPORTS -DIGRAPH_FILE_BASENAME=\"src/io/graphml.c\" -I/var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/include -I/var/tmp/portage/dev-libs/igraph- /var/tmp/portage/dev-libs/igraph-0.10.4/work/igraph-0.10.4/src/io/graphml.c:71:1: error: missing field 'expandedSize' initializer [-Werror,-Wmissing-field-initializers] 71 | }; | ^ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_plasma-20231225-172010 ------------------------------------------------------------------- CC=clang CXX=clang++ gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-13 * clang/llvm (if any): clang version 17.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/17/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/17 17.0.6 Python 3.11.7 Available Ruby profiles: (none found) Available Rust versions: [1] rust-bin-1.74.1 [2] rust-1.74.1 * The following VMs are available for generation-2: 1) IcedTea JDK 3.16.0 [icedtea-bin-8] 2) Eclipse Temurin JDK 11.0.20.1_p1 [openjdk-bin-11] 3) Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21] 5) Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8] Available Java Virtual Machines: [1] icedtea-bin-8 [2] openjdk-bin-8 [3] openjdk-bin-11 [4] openjdk-bin-17 [5] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): go version go1.21.5 linux/amd64 HEAD of ::gentoo commit d0e743839b5c845e9d3d5b9511bc9ca6b5ced290 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Mon Jan 1 16:02:01 2024 +0000 2024-01-01 16:02:01 UTC emerge -qpvO dev-libs/igraph [ebuild N ] dev-libs/igraph-0.10.4 USE="-debug -test -threads"