| Summary: | sci-biology/maq-0.7.1-r3 - fastq2bfq.c: error: assignment to struct gzFile_s from incompatible pointer type gzFile {aka struct gzFile_s } [-Wincompati | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | Keywords: | PullRequest |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://github.com/gentoo/gentoo/pull/36459 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 870412 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt.xz sci-biology:maq-0.7.1-r3:20231231-200714.log temp.tar.xz |
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Created attachment 881136 [details]
emerge-info.txt
Created attachment 881137 [details]
emerge-history.txt
Created attachment 881138 [details]
environment
Created attachment 881139 [details]
etc.clang.tar.xz
Created attachment 881140 [details]
etc.portage.tar.xz
Created attachment 881141 [details]
logs.tar.xz
Created attachment 881142 [details]
qlist-info.txt.xz
Created attachment 881143 [details]
sci-biology:maq-0.7.1-r3:20231231-200714.log
Created attachment 881144 [details]
temp.tar.xz
The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=061394aeecb50cf5301012467a02d1ada1e1be01 commit 061394aeecb50cf5301012467a02d1ada1e1be01 Author: Brahmajit Das <brahmajit.xyz@gmail.com> AuthorDate: 2024-04-27 19:15:05 +0000 Commit: David Seifert <soap@gentoo.org> CommitDate: 2024-04-27 19:15:05 +0000 sci-biology/maq: Fix assignment to incompatible pointer type Closes: https://github.com/gentoo/gentoo/pull/36459 Closes: https://bugs.gentoo.org/921137 Signed-off-by: Brahmajit Das <brahmajit.xyz@gmail.com> Signed-off-by: David Seifert <soap@gentoo.org> .../maq/files/maq-0.7.1-gcc14-build-fix.patch | 23 ++++++++++++++++++++++ .../{maq-0.7.1-r3.ebuild => maq-0.7.1-r4.ebuild} | 5 +++-- 2 files changed, 26 insertions(+), 2 deletions(-) |
48 | fread(&len, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wall -D_FASTMAP -DMAQ_LONGREADS -O2 -pipe -march=native -fno-diagnostics-color -c -o fasta2bfa.o fasta2bfa.c x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wall -D_FASTMAP -DMAQ_LONGREADS -O2 -pipe -march=native -fno-diagnostics-color -c -o fastq2bfq.o fastq2bfq.c x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wall -D_FASTMAP -DMAQ_LONGREADS -O2 -pipe -march=native -fno-diagnostics-color -c -o merge.o merge.cc fastq2bfq.c: In function fastq2bfq: fastq2bfq.c:30:12: error: assignment to struct gzFile_s ** from incompatible pointer type gzFile {aka struct gzFile_s *} [-Wincompatible-pointer-types] 30 | fp = gzopen(str, "w"); | ^ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no_multilib-20231228-120810 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-14 * clang/llvm (if any): clang version 17.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/17/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/17 17.0.6 Python 3.11.7 Available Rust versions: [1] rust-bin-1.74.1 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21] 3) Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-17 [3] openjdk-bin-21 system-vm php cli (if any): go version go1.21.5 linux/amd64 HEAD of ::gentoo commit 42e90b19f626e2aa6ebfa451a8c1dec689e45923 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sun Dec 31 19:47:01 2023 +0000 2023-12-31 19:47:01 UTC emerge -qpvO sci-biology/maq [ebuild N ] sci-biology/maq-0.7.1-r3