Bug 919453

Summary:	sci-mathematics/nauty-2.8.6-r1 - [clang] ld.lld: error: undefined symbol: _gmpz_init
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Mathematics related packages <sci-mathematics>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt sci-mathematics:nauty-2.8.6-r1:20231208-002142.log temp.tar.xz var.tmp.clang.tar.xz

Description Toralf Förster gentoo-dev

2023-12-08 09:55:55 UTC

too long lines were shrinked:

/bin/sh ./libtool  --tag=CC   --mode=link clang  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int  -Wl,-O1 -Wl,--as-needed -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o checks6 checks6-checks6.o ./libnauty.la -lcliquer  
/bin/sh ./libtool  --tag=CC   --mode=link clang  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int  -Wl,-O1 -Wl,--as-needed -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o sumlines sumlines-sumlines.o  
libtool: link: clang -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/dimacs2g dimacs2g-dimacs2g.o  -Wl,--as-needed ./.libs/libnauty.so -lcliquer -lz
libtool: link: clang -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o sumlines sumlines-sumlines.o  -Wl,--as-needed
/bin/sh ./libtool  --tag=CC   --mode=link clang  -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -version-info 10:6:8  -Wl,-O1 -Wl,--as-needed -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o libnautyA1.la -rpath /usr/lib64 libnauty
libtool: link: clang -O2 -pipe -march=native -fno-diagnostics-color -Werror=implicit-function-declaration -Werror=implicit-int -Wl,-O1 -Wl,--defsym=__gentoo_check_ldflags__=0 -o .libs/checks6 checks6-checks6.o  -Wl,--as-needed ./.libs/libnauty.so -lcliquer
ld.lld: error: undefined symbol: __gmpz_init
>>> referenced by sumlines.c
>>>               sumlines-sumlines.o:(main)

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd_clang_merged_usr-20231206-115013

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6+libcxx
Python 3.11.7
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.73.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
2)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
*)	Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8  system-vm
  [2]   openjdk-bin-17 
  [3]   openjdk-bin-21 

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
go version go1.21.4 linux/amd64

  HEAD of ::gentoo
commit a35770df91302efe6a07725ae16a9e84445a9dd9
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Thu Dec 7 22:16:59 2023 +0000

    2023-12-07 22:16:59 UTC

emerge -qpvO sci-mathematics/nauty
[ebuild  N    ] sci-mathematics/nauty-2.8.6-r1  USE="-examples" CPU_FLAGS_X86="popcnt"

Comment 1 Toralf Förster gentoo-dev

2023-12-08 09:55:56 UTC

Created attachment 878280 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2023-12-08 09:55:57 UTC

Created attachment 878281 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2023-12-08 09:55:59 UTC

Created attachment 878282 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2023-12-08 09:55:59 UTC

Created attachment 878283 [details]
etc.clang.tar.xz

Comment 5 Toralf Förster gentoo-dev

2023-12-08 09:56:00 UTC

Created attachment 878284 [details]
etc.portage.tar.xz

Comment 6 Toralf Förster gentoo-dev

2023-12-08 09:56:01 UTC

Created attachment 878285 [details]
logs.tar.xz

Comment 7 Toralf Förster gentoo-dev

2023-12-08 09:56:05 UTC

Created attachment 878286 [details]
qlist-info.txt

Comment 8 Toralf Förster gentoo-dev

2023-12-08 09:56:06 UTC

Created attachment 878287 [details]
sci-mathematics:nauty-2.8.6-r1:20231208-002142.log

Comment 9 Toralf Förster gentoo-dev

2023-12-08 09:56:07 UTC

Created attachment 878288 [details]
temp.tar.xz

Comment 10 Toralf Förster gentoo-dev

2023-12-08 09:56:08 UTC

Created attachment 878289 [details]
var.tmp.clang.tar.xz