| Summary: | sci-libs/scikit-learn-1.3.2-r1 - sklearn/.../_dist_metrics.c: error: passing argument 1 of _pyx_f_7sklearn_7metrics_13_dist_metrics_19EuclideanDistanc | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Related Packages <sci> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://bugs.gentoo.org/show_bug.cgi?id=918983 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 870412 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt.xz environment etc.clang.tar.xz etc.portage.tar.xz qlist-info.txt.xz sci-libs:scikit-learn-1.3.2-r1:20231205-100338.log.xz temp.tar.xz |
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Created attachment 877355 [details]
emerge-info.txt
Created attachment 877356 [details]
emerge-history.txt.xz
Created attachment 877357 [details]
environment
Created attachment 877358 [details]
etc.clang.tar.xz
Created attachment 877359 [details]
etc.portage.tar.xz
Created attachment 877360 [details]
qlist-info.txt.xz
Created attachment 877361 [details]
sci-libs:scikit-learn-1.3.2-r1:20231205-100338.log.xz
Created attachment 877362 [details]
temp.tar.xz
I fear this might be the same cython bug as bug 918983. The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=786a1575c3be3d8680b2b4aec6254cbae90ab30d commit 786a1575c3be3d8680b2b4aec6254cbae90ab30d Author: Sam James <sam@gentoo.org> AuthorDate: 2023-12-11 18:26:39 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2023-12-14 05:21:54 +0000 distutils-r1.eclass: workaround cython bug for Modern C Pass -Wno-error=incompatible-pointer-types for now to avoid many dupes for the same cython bug. Bug: https://github.com/cython/cython/issues/2747 Bug: https://bugs.gentoo.org/918983 Bug: https://bugs.gentoo.org/919261 Bug: https://bugs.gentoo.org/919277 Signed-off-by: Sam James <sam@gentoo.org> eclass/distutils-r1.eclass | 5 +++++ 1 file changed, 5 insertions(+) |
too long lines were shrinked: | ^ sklearn/metrics/_dist_metrics.c: In function __pyx_pf_7sklearn_7metrics_13_dist_metrics_16DistanceMetric64_24_pairwise_dense_sparse: sklearn/metrics/_dist_metrics.c:29787:27: warning: assignment discards const qualifier from pointer target type [-Wdiscarded-qualifiers] 29787 | __pyx_v_x1_data = ((&(*((__pyx_t_7sklearn_5utils_9_typedefs_float64_t const *) ( /* dim=1 */ ((char *) (((__pyx_t_7sklearn_5utils_9_typedefs_float64_t const *) ( /* dim=0 */ (__pyx_v_X_data.data + __pyx_t_15 * __pyx_v_X_data.strides[0]) )) + __pyx_t_16)) )))) + (__pyx_v_i1 * __py | ^ sklearn/metrics/_dist_metrics.c: In function __pyx_f_7sklearn_7metrics_13_dist_metrics_19EuclideanDistance64_dist_csr: sklearn/metrics/_dist_metrics.c:31433:90: error: passing argument 1 of __pyx_f_7sklearn_7metrics_13_dist_metrics_19EuclideanDistance64_rdist_csr from incompatible pointer type [-Wincompatible-pointer-types] 31433 | __pyx_t_1 = __pyx_f_7sklearn_7metrics_13_dist_metrics_19EuclideanDistance64_rdist_csr(((struct __pyx_obj_7sklearn_7metrics_13_dist_metrics_DistanceMetric64 *)__pyx_v_self), __pyx_v_x1_data, __pyx_v_x1_indices, __pyx_v_x2_data, __pyx_v_x2_indices, __pyx_v_x1_start, __pyx_v_x1_end, __pyx_v_x | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_gnome_systemd-20231123-162118 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10 [2] x86_64-pc-linux-gnu-14 * clang/llvm (if any): clang version 17.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/17/bin Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg /usr/lib/llvm/17 17.0.6 Python 3.11.7 Available Ruby profiles: [1] ruby31 (with Rubygems) * Available Rust versions: [1] rust-bin-1.73.0 * The following VMs are available for generation-2: 1) Eclipse Temurin JDK 11.0.20.1_p1 [openjdk-bin-11] 2) Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17] *) Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21] 4) Eclipse Temurin JDK 8.382_p05 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 [2] openjdk-bin-11 [3] openjdk-bin-17 [4] openjdk-bin-21 system-vm The Glorious Glasgow Haskell Compilation System, version 9.2.8 php cli (if any): [1] php8.1 [2] php8.2 * go version go1.21.4 linux/amd64 HEAD of ::gentoo commit a4651668089837239eb29cf0fe5302b976ade798 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Dec 5 08:31:59 2023 +0000 2023-12-05 08:31:58 UTC emerge -qpvO sci-libs/scikit-learn [ebuild N ] sci-libs/scikit-learn-1.3.2-r1 USE="examples -debug -test" PYTHON_TARGETS="python3_11 -python3_10 -python3_12"