Bug 919215

Summary:	sci-biology/yass-1.14-r3 - assemble.c: error: implicit declaration of function hashVerifie [-Wimplicit-function-declaration]
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	870412
Attachments:	emerge-info.txt emerge-history.txt.xz environment etc.clang.tar.xz etc.portage.tar.xz logs.tar.xz qlist-info.txt.xz sci-biology:yass-1.14-r3:20231204-101733.log temp.tar.xz

Description Toralf Förster gentoo-dev

2023-12-04 20:12:47 UTC

too long lines were shrinked:

make[1]: Entering directory '/var/tmp/portage/sci-biology/yass-1.14-r3/work/yass-1.14/src'
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
x86_64-pc-linux-gnu-gcc -DPACKAGE_NAME=\"yass\" -DPACKAGE_TARNAME=\"yass\" -DPACKAGE_VERSION=\"1.14\" -DPACKAGE_STRING=\"yass\ 1.14\" -DPACKAGE_BUGREPORT=\"laurent.noe@lifl.fr\" -DPACKAGE_URL=\"\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRIN
assemble.c: In function Assemble_Single:
assemble.c:116:94: error: implicit declaration of function hashVerifie [-Wimplicit-function-declaration]
  116 | )        putHashOneDiagValue (&table,index,(long int)value);hashVerifie(&table,"here",index);
      |                                                             ^~~~~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib-20231127-152538

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-14 *
clang/llvm (if any):
clang version 17.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/17/bin
Configuration file: /etc/clang/x86_64-pc-linux-gnu-clang.cfg
/usr/lib/llvm/17
17.0.6
Python 3.11.6
Available Rust versions:
  [1]   rust-bin-1.73.0 *
The following VMs are available for generation-2:
1)	OpenJDK 17.0.8.1_p1 [openjdk-17]
2)	OpenJDK 21.0.1_p12 [openjdk-21]
3)	OpenJDK 8.382_p05 [openjdk-8]
4)	Eclipse Temurin JDK 17.0.8.1_p1 [openjdk-bin-17]
*)	Eclipse Temurin JDK 21.0.1_p12 [openjdk-bin-21]
Available Java Virtual Machines:
  [1]   openjdk-8 
  [2]   openjdk-17 
  [3]   openjdk-21 
  [4]   openjdk-bin-17 
  [5]   openjdk-bin-21  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.2.8
php cli (if any):
go version go1.21.4 linux/amd64

  HEAD of ::gentoo
commit f80a022aa25fd4fb8f90e26baf83e2261253e1ad
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Mon Dec 4 09:36:54 2023 +0000

    2023-12-04 09:36:54 UTC

emerge -qpvO sci-biology/yass
[ebuild  N    ] sci-biology/yass-1.14-r3  USE="dmalloc lowmem -threads"

Comment 1 Toralf Förster gentoo-dev

2023-12-04 20:12:48 UTC

Created attachment 877046 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2023-12-04 20:12:49 UTC

Created attachment 877047 [details]
emerge-history.txt.xz

Comment 3 Toralf Förster gentoo-dev

2023-12-04 20:12:50 UTC

Created attachment 877048 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2023-12-04 20:12:51 UTC

Created attachment 877049 [details]
etc.clang.tar.xz

Comment 5 Toralf Förster gentoo-dev

2023-12-04 20:12:52 UTC

Created attachment 877050 [details]
etc.portage.tar.xz

Comment 6 Toralf Förster gentoo-dev

2023-12-04 20:12:53 UTC

Created attachment 877051 [details]
logs.tar.xz

Comment 7 Toralf Förster gentoo-dev

2023-12-04 20:12:54 UTC

Created attachment 877052 [details]
qlist-info.txt.xz

Comment 8 Toralf Förster gentoo-dev

2023-12-04 20:12:55 UTC

Created attachment 877053 [details]
sci-biology:yass-1.14-r3:20231204-101733.log

Comment 9 Toralf Förster gentoo-dev

2023-12-04 20:12:56 UTC

Created attachment 877054 [details]
temp.tar.xz