Bug 910585 – sci-chemistry/dssp-4.4.0 - ninja: build stopped: subcommand failed.

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Toralf Förster 2023-07-20 11:38:54 UTC]

too long lines were shrinked:

[3/9] cd /var/tmp/portage/sci-chemistry/dssp-4.4.0/work/dssp-4.4.0/doc && /usr/bin/pandoc -o mkdssp.pdf mkdssp.1 -t html
FAILED: /var/tmp/portage/sci-chemistry/dssp-4.4.0/work/dssp-4.4.0/doc/mkdssp.pdf 
cd /var/tmp/portage/sci-chemistry/dssp-4.4.0/work/dssp-4.4.0/doc && /usr/bin/pandoc -o mkdssp.pdf mkdssp.1 -t html
wkhtmltopdf not found. Please select a different --pdf-engine or install wkhtmltopdf
[4/9] /usr/bin/x86_64-pc-linux-gnu-g++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Ddssp_EXPORTS -I/var/tmp/portage/sci-chemistry/dssp-4.4.0/work/dssp-4.4.0/include  -O2 -pipe -march=native -fno-diagnostics-color -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-init
[5/9] /usr/bin/x86_64-pc-linux-gnu-g++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -Ddssp_EXPORTS -I/var/tmp/portage/sci-chemistry/dssp-4.4.0/work/dssp-4.4.0/include  -O2 -pipe -march=native -fno-diagnostics-color -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-init
ninja: build stopped: subcommand failed.
 * ERROR: sci-chemistry/dssp-4.4.0::gentoo failed (compile phase):
 *   ninja -v -j5 -l0 failed

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd_merged_usr-20230718-152531

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10
 [2] x86_64-pc-linux-gnu-13 *
clang/llvm (if any):
clang version 16.0.6
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/16/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/16
16.0.6
Python 3.11.4
Available Ruby profiles:
  [1]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.70.0 *
The following VMs are available for generation-2:
1)	Eclipse Temurin JDK 11.0.19_p7 [openjdk-bin-11]
*)	Eclipse Temurin JDK 17.0.7_p7 [openjdk-bin-17]
3)	Eclipse Temurin JDK 8.372_p07 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11 
  [3]   openjdk-bin-17  system-vm

php cli (if any):
go version go1.20.6 linux/amd64

  HEAD of ::gentoo
commit 2e050d185dbbe47f023f9d2ca9c5cf0ba44c9fba
Author: Repository mirror & CI <[e-mail]>
Date:   Thu Jul 20 08:46:52 2023 +0000

    2023-07-20 08:46:52 UTC

emerge -qpvO sci-chemistry/dssp
[ebuild  N    ] sci-chemistry/dssp-4.4.0

[Comment 1 Toralf Förster 2023-07-20 11:38:55 UTC]

Created attachment 865822 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2023-07-20 11:38:56 UTC]

Created attachment 865823 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2023-07-20 11:38:58 UTC]

Created attachment 865824 [details]
environment

[Comment 4 Toralf Förster 2023-07-20 11:38:59 UTC]

Created attachment 865825 [details]
etc.clang.tar.xz

[Comment 5 Toralf Förster 2023-07-20 11:39:00 UTC]

Created attachment 865826 [details]
etc.portage.tar.xz

[Comment 6 Toralf Förster 2023-07-20 11:39:01 UTC]

Created attachment 865827 [details]
sci-chemistry:dssp-4.4.0:20230720-093426.log

[Comment 7 Toralf Förster 2023-07-20 11:39:02 UTC]

Created attachment 865828 [details]
temp.tar.xz

[Comment 8 Larry the Git Cow 2023-07-21 08:01:28 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ddf8fcf2b6c6e590991202b108173b2e9792fe3d

commit ddf8fcf2b6c6e590991202b108173b2e9792fe3d
Author:     Pacho Ramos <[e-mail]>
AuthorDate: 2023-07-21 08:00:36 +0000
Commit:     Pacho Ramos <[e-mail]>
CommitDate: 2023-07-21 08:01:18 +0000

    sci-chemistry/dssp: add 4.4.1
    
    Closes: https://bugs.gentoo.org/910585
    Signed-off-by: Pacho Ramos <[e-mail]>

 sci-chemistry/dssp/Manifest          |  1 +
 sci-chemistry/dssp/dssp-4.4.1.ebuild | 54 ++++++++++++++++++++++++++++++++++++
 2 files changed, 55 insertions(+)