Bug 907972

Summary:	sci-biology/kallisto-0.46.2 fails to compile (MUSL-SYSTEM): common.h:132:24: error: std::string pretty_num redeclared as different kind of entity
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	CONFIRMED ---
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2023-06-07 06:54:56 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/kallisto-0.46.2 fails to compile (MUSL-SYSTEM).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
(MUSL-SYSTEM) in the summary means that bug was found on a machine that runs MUSL libc but this bug MAY or MAY NOT BE related to musl.

Comment 1 Agostino Sarubbo gentoo-dev

2023-06-07 06:54:58 UTC

Created attachment 863441 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2023-06-07 06:54:59 UTC

Error(s) that match a know pattern in addition to what has been reported in the summary:


FAILED: src/CMakeFiles/kallisto_core.dir/Bootstrap.cpp.o 
FAILED: src/CMakeFiles/kallisto_core.dir/MinCollector.cpp.o 
FAILED: src/CMakeFiles/kallisto_core.dir/common.cpp.o 
/var/tmp/portage/sci-biology/kallisto-0.46.2/work/kallisto-0.46.2/src/common.h:132:24: error: 'std::string pretty_num' redeclared as different kind of entity