Bug 903029 – app-doc/doxygen-1.9.6 fails to build with USE=doc on arm64

• Product: Gentoo Linux
• Status: RESOLVED FIXED

[Description Roy Bamford 2023-03-25 11:49:46 UTC]

The build fails at [171/276] cd /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/examples && /usr/bin/cmake -E make_directory /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/html/examples/diagrams && /usr/bin/cmake -E make_directory /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams && /usr/bin/cmake -E env PROJECT_BINARY_DIR=/var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/bin/doxygen diagrams.cfg && /var/tmp/portage/app-doc/doxygen-1.9.6/temp/python3.11/bin/python /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6/examples/strip_example.py < /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/refman.tex > /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/refman_doc.tex
FAILED: html/examples/diagrams/html/index.html latex/examples/diagrams/latex/refman_doc.tex /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/html/examples/diagrams/html/index.html /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/refman_doc.tex 
cd /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/examples && /usr/bin/cmake -E make_directory /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/html/examples/diagrams && /usr/bin/cmake -E make_directory /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams && /usr/bin/cmake -E env PROJECT_BINARY_DIR=/var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/bin/doxygen diagrams.cfg && /var/tmp/portage/app-doc/doxygen-1.9.6/temp/python3.11/bin/python /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6/examples/strip_example.py < /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/refman.tex > /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/refman_doc.tex
error: Failed to extract bounding box from generated diagram file /var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/class_c__inherit__graph.pdf
/var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/class_c__inherit__graph.dot:1: error: Problems running dot: exit code=0, command='dot', arguments='"/var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/class_c__inherit__graph.dot" -Tpdf -o "/var/tmp/portage/app-doc/doxygen-1.9.6/work/doxygen-1.9.6_build/latex/examples/diagrams/latex/class_c__inherit__graph.pdf"'


Reproducible: Always

Steps to Reproduce:
1. emerge -1av app-doc/doxygen with USE=doc
2. read the build log.
3.
Actual Results:  
The build fails. The first error is above.

Expected Results:  
The build works so i can try to build app-text/libspectre-0.2.11::gentoo[doc].
Portage wants 
The following USE changes are necessary to proceed:
 (see "package.use" in the portage(5) man page for more details)
# required by app-text/libspectre-0.2.11::gentoo[doc]
# required by @__auto_slot_operator_replace_installed__ (argument)
>=app-doc/doxygen-1.9.6 doc


Pi4_GCC-12 ~ # emerge --info
Portage 3.0.45.3 (python 3.10.10-final-0, default/linux/arm64/17.0/desktop, gcc-12, glibc-2.37-r1, 6.1.1-gentoo aarch64)
=================================================================
System uname: Linux-6.1.1-gentoo-aarch64-with-glibc2.37
KiB Mem:    72945508 total,  64262836 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Fri, 24 Mar 2023 19:00:01 +0000
Head commit of repository gentoo: eebf1f31a05bd167a072a042b09b40cc0bb4afd5
sh bash 5.2_p15-r2
ld GNU ld (Gentoo 2.39 p5) 2.39.0
distcc 3.4 aarch64-unknown-linux-gnu [disabled]
app-misc/pax-utils:        1.3.7::gentoo
app-shells/bash:           5.2_p15-r2::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0-r2::gentoo
dev-lang/python:           3.9.16::gentoo, 3.10.10_p3::gentoo, 3.11.2_p2::gentoo
dev-lang/rust:             1.67.1::gentoo
dev-util/cmake:            3.26.0::gentoo
dev-util/meson:            1.0.1::gentoo
sys-apps/baselayout:       2.13-r1::gentoo
sys-apps/openrc:           0.46::gentoo
sys-apps/sandbox:          2.30-r1::gentoo
sys-devel/autoconf:        2.13-r7::gentoo, 2.71-r5::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39-r4::gentoo, 2.40-r3::gentoo
sys-devel/binutils-config: 5.5::gentoo
sys-devel/clang:           14.0.6-r1::gentoo, 15.0.7-r1::gentoo, 16.0.0::gentoo
sys-devel/gcc:             11.3.1_p20221007::gentoo, 12.2.1_p20230304::gentoo
sys-devel/gcc-config:      2.10::gentoo
sys-devel/libtool:         2.4.7-r1::gentoo
sys-devel/lld:             14.0.6-r1::gentoo, 15.0.7::gentoo
sys-devel/llvm:            13.0.1::gentoo, 14.0.6-r2::gentoo, 15.0.7::gentoo, 16.0.0::gentoo
sys-devel/make:            4.4.1::gentoo
sys-kernel/linux-headers:  6.2::gentoo (virtual/os-headers)
sys-libs/glibc:            2.37-r1::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    volatile: False
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes

Installed sets: @extras, @fs-extras, @kde-extras, @more_extras
ACCEPT_KEYWORDS="arm64 ~arm64"
ACCEPT_LICENSE="@FREE all-rights-reserved bh-luxi bluez-firmware fairuse FraunhoferFDK freedist IUPAC-InChi kaptan linux-firmware linux-fw-redistributable MPEG-4 MSttfEULA no-source-code OSGi-Specification-2.0 raspberrypi-videocore-bin rpi-eeprom SSPL-1 sun-bcla-jai Turkowski unRAR xgraph"
CBUILD="aarch64-unknown-linux-gnu"
CFLAGS="-mcpu=cortex-a72+crc -mtune=cortex-a72 -ftree-vectorize -O2 -pipe -fomit-frame-pointer -flto=6"
CHOST="aarch64-unknown-linux-gnu"
CONFIG_PROTECT="/boot/cmdline.txt /boot/config.txt /etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.4/ext-active/ /etc/php/apache2-php8.0/ext-active/ /etc/php/apache2-php8.1/ext-active/ /etc/php/apache2-php8.2/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cgi-php8.0/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cgi-php8.2/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/php/cli-php8.0/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/cli-php8.2/ext-active/ /etc/php/fpm-php7.4/ext-active/ /etc/php/fpm-php8.0/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/fpm-php8.2/ext-active/ /etc/php/phpdbg-php7.4/ext-active/ /etc/php/phpdbg-php8.0/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/php/phpdbg-php8.2/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-mcpu=cortex-a72+crc -mtune=cortex-a72 -ftree-vectorize -O2 -pipe -fomit-frame-pointer -flto=6"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GDK_PIXBUF_MODULE_FILE GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-mcpu=cortex-a72+crc -mtune=cortex-a72 -ftree-vectorize -O2 -pipe -fomit-frame-pointer -flto=6"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg buildpkg-live collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-mcpu=cortex-a72+crc -mtune=cortex-a72 -ftree-vectorize -O2 -pipe -fomit-frame-pointer -flto=6"
GENTOO_MIRRORS="http://mirrors.gethosted.online/gentoo                 http://www.mirrorservice.org/sites/distfiles.gentoo.org/                 http://mirrors.soeasyto.com/distfiles.gentoo.org/                 http://mirror.leaseweb.com/gentoo/                 http://gentoo.mirrors.ovh.net/gentoo-distfiles/                 http://ftp.snt.utwente.nl/pub/os/linux/gentoo                 https://www.mirrorservice.org/sites/distfiles.gentoo.org/                 http://mirror.bytemark.co.uk/gentoo/                  http://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/                  http://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LEX="flex"
LINGUAS="en en_GB"
MAKEOPTS="-j32"
PKGDIR="/var/cache/packages"
PORTAGE_BINHOST="http://bloodnoc.org/~roy/BINHOSTS/gcc-12.x/armv8a"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="X a52 aac aalib accessibility acl acpi alsa arm64 bluetooth bluray branding btrfs bzip2 cairo cdda cdr clamav clang cli context crypt cups dbus default-gold dillo dmraid doc dot dri dts dvd dvdnav dvdr eds egl elogind encode exif extras f2fs faad fat ffmpeg flac fontconfig fortran gdbm geoclue gif gles1 gnome-keyring gpm graphite gstreamer gtk gtk3 gui hfs iconv icu introspection iptables ipv6 jack jadetex jfs jit jpeg kde latex lcms libglvnd libnotify libtirpc lto lvm mad map mdadm minizip mng modemmanager mp3 mp4 mpeg mysql mysqli ncurses netifrc ngspice nls nptl nss ntfs ogg openexr opengl openmp openssl pam pango pcre pcre16 pcre32 pdf php pie pim png policykit postgres postproc ppds python qml qt5 rar raspberry-pi readline reiser4 reiserfs script sdk sdl seccomp servletapi skia sound speex spell split-usr sqlite ssl ssp startup-notification svc svg test-rust thesaurus thin threads tiff tk truetype twolame udev udf udisks unicode upower usb vala virt-network vorbis vulkan webengine widgets wmf wxwidgets x264 x265 xattr xcb xface xfs xft xml xpm xscreensaver xv xvfb xvid xvmc zip zlib" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_ARM="edsp thumb vfp vfpv3 vfpv4 vfp-d32 crc32 v4 v5 v6 v7 v8 thumb2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev libinput synaptics" KERNEL="linux" L10N="en en-GB" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" RUBY_TARGETS="ruby26 ruby27 ruby30 ruby31 ruby32" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev nouveau radeon radeonsi v3d vc4" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS

[Comment 1 Roy Bamford 2023-03-25 11:50:25 UTC]

Created attachment 858977 [details]
Build Log

[Comment 2 Matthias Maier 2023-03-30 15:56:42 UTC]

This is a long-standing issue with cairo 1.17.6
https://github.com/doxygen/doxygen/issues/9319

I will try to backport some patches.

[Comment 3 Erik 2023-04-02 06:57:36 UTC]

Created attachment 859407 [details]
build.log

confirmed on amd64

[Comment 4 Yarda 2023-05-01 23:34:50 UTC]

Hit it on i686.

[Comment 5 Klaus Kusche 2023-05-19 07:06:45 UTC]

(In reply to Matthias Maier from comment #2)
> This is a long-standing issue with cairo 1.17.6
> https://github.com/doxygen/doxygen/issues/9319

Doxygen 1.9.7 is available and issue 9319 was closed with 1.9.7
(I don't know if 1.9.7 really fixes the problem).

Please version bump.

[Comment 6 Larry the Git Cow 2023-05-20 04:48:43 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d3d66a260ae0b1e4a8b891cb387015747e26854e

commit d3d66a260ae0b1e4a8b891cb387015747e26854e
Author:     Sam James <[e-mail]>
AuthorDate: 2023-05-20 04:48:22 +0000
Commit:     Sam James <[e-mail]>
CommitDate: 2023-05-20 04:48:22 +0000

    app-doc/doxygen: add 1.9.7
    
    Closes: https://bugs.gentoo.org/884185
    Closes: https://bugs.gentoo.org/903029
    Signed-off-by: Sam James <[e-mail]>

 app-doc/doxygen/Manifest             |   1 +
 app-doc/doxygen/doxygen-1.9.7.ebuild | 139 +++++++++++++++++++++++++++++++++++
 app-doc/doxygen/doxygen-9999.ebuild  |   4 +-
 3 files changed, 142 insertions(+), 2 deletions(-)