Bug 898710

Summary:	dev-python/pytables-3.8.0-r1 fails to compile (CYTHON3-SYSTEM): Cython.Compiler.Errors.CompileError: utilsextension.pyx
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Python Gentoo Team <python>
Status:	RESOLVED FIXED
Severity:	normal	CC:	mgorny, sci
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
See Also:	https://github.com/PyTables/PyTables/issues/1003
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	897934
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2023-03-02 08:26:40 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-python/pytables-3.8.0-r1 fails to compile (CYTHON3-SYSTEM).
Discovered on: amd64 (internal ref: hardened_tinderbox)

NOTE:
(CYTHON3-SYSTEM) in the summary means that the bug was found on a machine that runs dev-python/cython-3 but this bug MAY or MAY NOT BE related to the new version of cython

Comment 1 Agostino Sarubbo gentoo-dev

2023-03-02 08:26:42 UTC

Created attachment 855560 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2023-03-02 08:26:43 UTC

Error(s) that match a know pattern in addition to what has been reported in the summary:


.. WARNING:: Could not find the LZO 2 runtime.
.. WARNING:: Could not find the bzip2 runtime.
Cython.Compiler.Errors.CompileError: tables/utilsextension.pyx

Comment 3 Larry the Git Cow gentoo-dev

2023-05-11 06:26:40 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fe9b3c589dc0033b806bf3632e4fa9a445a696cd

commit fe9b3c589dc0033b806bf3632e4fa9a445a696cd
Author:     Michał Górny <mgorny@gentoo.org>
AuthorDate: 2023-05-11 06:20:47 +0000
Commit:     Michał Górny <mgorny@gentoo.org>
CommitDate: 2023-05-11 06:22:22 +0000

    dev-python/pytables: Backport cython-3 fix
    
    Closes: https://bugs.gentoo.org/898710
    Signed-off-by: Michał Górny <mgorny@gentoo.org>

 .../pytables/files/pytables-3.8.0-cython3.patch    | 40 ++++++++++++++++++++++
 dev-python/pytables/pytables-3.8.0-r3.ebuild       |  1 +
 2 files changed, 41 insertions(+)