Bug 898282

Summary:	sci-libs/hdf5-1.10.5-r1 fails to compile (MUSL-CLANG-SYSTEM): H5Odeprec.c:141:8: error: call to undeclared function H5CX_set_apl; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Gentoo Science Related Packages <sci>
Status:	CONFIRMED ---
Severity:	normal	CC:	admnd
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	870412, 941869
Attachments:	build.log

Description Agostino Sarubbo gentoo-dev

2023-02-28 09:43:22 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-libs/hdf5-1.10.5-r1 fails to compile (MUSL-CLANG-SYSTEM).
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
(MUSL-CLANG-SYSTEM) in the summary means that bug was found on a machine that runs MUSL libc + clang16 but this bug MAY or MAY NOT BE related to musl/clang16.

Comment 1 Agostino Sarubbo gentoo-dev

2023-02-28 09:43:25 UTC

Created attachment 855106 [details]
build.log

build log and emerge --info

Comment 2 Andreas K. Hüttel archtester

2024-10-22 19:25:51 UTC

Is this still happening with newer versions?

Comment 3 Adrien Dessemond 2024-10-26 16:32:22 UTC

(In reply to Andreas K. Hüttel from comment #2)
> Is this still happening with newer versions?

1.12.2-r4 and 1.14.4_p3-r1 do not exhibit the issue. I did not test all the versions in-between but I guess they should not pose any compilation issues, or at least not this one.

What is somewhat bothering is that:

sys-cluster/slurm-24.05.3 (hdf5 ? <sci-libs/hdf5-1.12)


I will tinker the dependency a little bit to make Slurm use a later version of sci-libs/hdf5 and will see what happens.