Bug 893336

Summary:	dev-lang/julia-1.8.3-r2 fails to compile (HARDENED-SYSTEM): System library symlink failure: Unable to locate libpcre2-8.so on your system!
Product:	Gentoo Linux	Reporter:	Agostino Sarubbo <ago>
Component:	Current packages	Assignee:	Matthias Maier <tamiko>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sam, sci
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	build.log.xz

Description Agostino Sarubbo gentoo-dev

2023-02-06 07:46:32 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-lang/julia-1.8.3-r2 fails to compile (HARDENED-SYSTEM).
Discovered on: amd64 (internal ref: hardened_tinderbox)

NOTE:
(HARDENED-SYSTEM) in the summary means that the bug was found on a machine that runs an hardened profile with -D_FORTIFY_SOURCE=3 and -D_GLIBCXX_ASSERTIONS (https://www.gentoo.org/support/news-items/2023-01-01-hardening-fortify-assertions.html) but this bug MAY or MAY NOT BE related to the changes related to hardened.

Comment 1 Agostino Sarubbo gentoo-dev

2023-02-06 07:46:35 UTC

Created attachment 849946 [details]
build.log.xz

build log and emerge --info (compressed because it exceeds attachment limit, use 'xzless' to read it)

Comment 2 Agostino Sarubbo gentoo-dev

2023-02-06 07:46:36 UTC

Error(s) that match a know pattern in addition to what has been reported in the summary:


-- Could NOT find OCaml (missing: OCAMLFIND OCAML_VERSION OCAML_STDLIB_PATH) 
-- Could NOT find Python module pygments
-- Could NOT find Python module pygments.lexers.c_cpp
-- Could NOT find Python module yaml
rm: cannot remove '/var/tmp/portage/dev-lang/julia-1.8.3-r2/work/julia-1.8.3/usr/manifest/SHA': No such file or directory
rm: cannot remove '/var/tmp/portage/dev-lang/julia-1.8.3-r2/work/julia-1.8.3/usr/manifest/SparseArrays': No such file or directory
rm: cannot remove '/var/tmp/portage/dev-lang/julia-1.8.3-r2/work/julia-1.8.3/usr/manifest/SuiteSparse': No such file or directory

Comment 3 Sam James archtester

2023-02-13 05:25:35 UTC

System library symlink failure: Unable to locate libpcre2-8.so on your system!
make[1]: *** [Makefile:224: /var/tmp/portage/dev-lang/julia-1.8.3-r2/work/julia-1.8.3/usr/lib/julia/libpcre2-8.so] Error 1
make[1]: Leaving directory '/var/tmp/portage/dev-lang/julia-1.8.3-r2/work/julia-1.8.3/base'

Comment 4 Sam James archtester

2023-02-13 05:45:58 UTC

This might be to do with libpcre2[split-usr] recently starting to move libpcre2-8.so.

Comment 5 tepidjuice 2023-02-13 06:31:37 UTC

As suggested on gentoo IRC compiling without libpcre seems to work.

MAKEOPTS="USE_SYSTEM_PCRE=0 -j8" emerge -v1 julia

Comment 6 Larry the Git Cow gentoo-dev

2023-02-13 14:46:50 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=6a765b80ea66ff0ac1d24c07be466cd754749c3e

commit 6a765b80ea66ff0ac1d24c07be466cd754749c3e
Author:     Maciej Barć <xgqt@gentoo.org>
AuthorDate: 2023-02-13 14:43:52 +0000
Commit:     Maciej Barć <xgqt@gentoo.org>
CommitDate: 2023-02-13 14:46:12 +0000

    dev-lang/julia: build libpcre
    
    Closes: https://bugs.gentoo.org/893336
    Signed-off-by: Maciej Barć <xgqt@gentoo.org>

 dev-lang/julia/{julia-1.8.3-r2.ebuild => julia-1.8.3-r3.ebuild} | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)