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Bug 883663

Summary: sci-biology/clustalw-mpi-0.13-r3 - stupid.c: error: implicit declaration of function pforward_pass [-Werror=implicit-function-decl
Product: Gentoo Linux Reporter: Toralf Förster <toralf>
Component: Current packagesAssignee: Gentoo Science Biology related packages <sci-biology>
Status: CONFIRMED ---    
Severity: normal    
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
Whiteboard:
Package list:
Runtime testing required: ---
Bug Depends on:    
Bug Blocks: 870412    
Attachments: emerge-info.txt
emerge-history.txt
environment
etc.clang.tar.bz2
etc.portage.tar.bz2
sci-biology:clustalw-mpi-0.13-r3:20221129-185501.log
temp.tar.bz2

Description Toralf Förster gentoo-dev 2022-11-29 19:16:11 UTC
  501 |                                                 fgets(line,MAXLINE+1,fin);
      |                                                 ^~~~~~~~~~~~~~~~~~~~~~~~~
mpicc  -pipe -march=native -fno-diagnostics-color -O2 -D_GLIBCXX_ASSERTIONS -Werror=implicit-function-declaration -Werror=implicit-int -c stupid.c
stupid.c: In function mypdiff:
stupid.c:347:17: error: implicit declaration of function pforward_pass [-Werror=implicit-function-declaration]
  347 |                 pforward_pass(midi, t, tl, A, B, N, HH, DD);
      |                 ^~~~~~~~~~~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib_hardened-j4-20221129-050010

  -------------------------------------------------------------------

GNUMAKEFLAGS="$GNUMAKEFLAGS --shuffle"
CC=clang
CXX=clang++
gcc-config -l:
 [1] x86_64-pc-linux-gnu-12 *
clang/llvm (if any):
clang version 15.0.5
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.5
Python 3.10.8
Available Ruby profiles:
  [1]   ruby27 (with Rubygems)
  [2]   ruby31 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.65.0 *
php cli (if any):

  HEAD of ::gentoo
commit b870f76767a67024fdd5574a7d807da03d837651
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Nov 29 18:02:02 2022 +0000

    2022-11-29 18:02:02 UTC

emerge -qpvO sci-biology/clustalw-mpi
[ebuild  N    ] sci-biology/clustalw-mpi-0.13-r3  USE="-mpi-njtree -static-pairalign"
Comment 1 Toralf Förster gentoo-dev 2022-11-29 19:16:12 UTC
Created attachment 838343 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2022-11-29 19:16:14 UTC
Created attachment 838345 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2022-11-29 19:16:15 UTC
Created attachment 838347 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2022-11-29 19:16:16 UTC
Created attachment 838349 [details]
etc.clang.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2022-11-29 19:16:17 UTC
Created attachment 838351 [details]
etc.portage.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2022-11-29 19:16:19 UTC
Created attachment 838353 [details]
sci-biology:clustalw-mpi-0.13-r3:20221129-185501.log
Comment 7 Toralf Förster gentoo-dev 2022-11-29 19:16:20 UTC
Created attachment 838355 [details]
temp.tar.bz2