Bug 869206 – sci-libs/avogadrolibs: drop dependency to sci-chemistry/molequeue

• Product: Gentoo Linux
• Status: UNCONFIRMED ---

[Description Michelangelo Scopelliti 2022-09-08 16:46:00 UTC]

According to the release notes, avogadrolibs removed the dependency on molequeue in the 1.94.0 release; see https://github.com/OpenChemistry/avogadrolibs/releases/tag/1.94.0

Reproducible: Always




emerge --info

Portage 3.0.35 (python 3.10.7-final-0, default/linux/amd64/17.1, gcc-12.2.0, glibc-2.35-r8, 5.19.7 x86_64)
=================================================================
System uname: Linux-5.19.7-x86_64-Intel-R-_Core-TM-_i7-7700_CPU_@_3.60GHz-with-glibc2.35
KiB Mem:    32583628 total,  14606080 free
KiB Swap:   33554428 total,  33551076 free
Head commit of repository gentoo: a4d7036bb25df86c47872ac184337cac505f6856

Timestamp of repository guru: Thu, 08 Sep 2022 10:40:24 +0000
Head commit of repository guru: 01f595ed5503107440bbf4b92d1439a337460139

sh bash 5.1_p16-r2
ld GNU ld (Gentoo 2.39 p4) 2.39.0
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.1_p16-r2::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0::gentoo
dev-lang/python:           3.10.7::gentoo, 3.11.0_rc1_p2::gentoo
dev-lang/rust:             1.62.1::gentoo
dev-util/cmake:            3.24.1::gentoo
dev-util/meson:            0.63.2::gentoo
sys-apps/baselayout:       2.8-r2::gentoo
sys-apps/openrc:           0.45.2::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-devel/autoconf:        2.13-r2::gentoo, 2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39-r2::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/clang:           14.0.6-r1::gentoo
sys-devel/gcc:             12.2.0::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/lld:             14.0.6::gentoo
sys-devel/llvm:            14.0.6-r2::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.19::gentoo (virtual/os-headers)
sys-libs/glibc:            2.35-r8::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo/gentoo.git
    priority: -1000

guru
    location: /var/db/repos/guru
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/guru.git
    masters: gentoo

kernelpanic
    location: /var/db/repos/kernelpanic
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE @BINARY-REDISTRIBUTABLE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -mtune=native -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=native -mtune=native -pipe"
DISTDIR="/var/cache/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -march=native -mtune=native -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live cgroup clean-logs compress-build-logs config-protect-if-modified distlocks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-elog split-log strict unknown-features-warn unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -march=native -mtune=native -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="it_IT.UTF-8"
LDFLAGS="-fuse-ld=mold -Wl,-O2 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C target-cpu=native -C opt-level=2"
SHELL="/bin/bash"
USE="X a52 aac acl acpi alsa amd64 amr ao avif blas bluray boost branding brotli bzip2 cairo cdda clang cli crypt cups curl dbus djvu dri dvb dvd elogind encode eselect-ldso exif ffmpeg fftw flac fontconfig fortran fribidi gdbm gif gimp gmp gpm gsm gtk harfbuzz heif iconv icu imlib inotify ipv6 jbig jemalloc jit jpeg jpeg2k lapack lcms libass libglvnd libnotify libsamplerate libtirpc llvm lto luajit lvm lz4 lzma lzo mng mp3 mpeg multilib natspec ncurses nls nptl offensive ogg openal opencv openexr opengl openmp opus pam pango pcre pcre16 pdf pgo png policykit postproc postscript printsupport pulseaudio raw readline rubberband scanner seccomp smp sndfile sox speex spell split-usr ssl svg theora threads tiff truetype udev udisks unicode usb v4l vaapi vdpau vidstab vim-syntax vorbis vpx vulkan wavpack webp wmf x264 x265 xattr xcb xcomposite xdg xetex xml xpm xv xvid zeroconf zip zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput wacom" KERNEL="linux" L10N="it en" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="BPF" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" QEMU_SOFTMMU_TARGETS="aarch64 arm x86_64" QEMU_USER_TARGETS="aarch64 arm x86_64" RUBY_TARGETS="ruby31" SANE_BACKENDS="hp" USERLAND="GNU" VIDEO_CARDS="intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS