| Summary: | sci-biology/velvet-1.2.10 - x86_64-pc-linux-gnu-gcc: fatal error: cannot read spec file libgomp.spec: No such file or directory | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Biology related packages <sci-biology> |
| Status: | CONFIRMED --- | ||
| Severity: | normal | ||
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tar.bz2 sci-biology:velvet-1.2.10:20220812-043745.log temp.tar.bz2 |
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Created attachment 799401 [details]
emerge-info.txt
Created attachment 799403 [details]
emerge-history.txt
Created attachment 799405 [details]
environment
Created attachment 799407 [details]
etc.portage.tar.bz2
Created attachment 799409 [details]
sci-biology:velvet-1.2.10:20220812-043745.log
Created attachment 799411 [details]
temp.tar.bz2
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src/autoOpen.c:28:17: warning: ignoring return value of dup declared with attribute warn_unused_result [-Wunused-result] 28 | dup(out[1]); | ^~~~~~~~~~~ x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp -pipe -march=native -fno-diagnostics-color -O2 -fPIC -fopenmp -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fopenmp -o velveth obj/tightString.o obj/run.o obj/recycleBin.o obj/splay.o obj/splayTable.o obj/readSet.o obj/binarySequences.o obj/utility.o obj/kmer.o obj/kmerOccurenceTable.o obj/autoOpen.o -lz -lm x86_64-pc-linux-gnu-gcc: fatal error: cannot read spec file libgomp.spec: No such file or directory compilation terminated. make: *** [Makefile:71: velveth] Error 1 ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1-j4-20220810-180004 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12.1.1 * clang/llvm (if any): clang version 14.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/14/bin /usr/lib/llvm/14 14.0.6 Python 3.10.6 Available Ruby profiles: [1] ruby27 (with Rubygems) [2] ruby31 (with Rubygems) * Available Rust versions: [1] rust-bin-1.62.1 * The following VMs are available for generation-2: *) Eclipse Temurin JDK 8.332_p09 [openjdk-bin-8] 2) Eclipse Temurin JRE 17.0.3_p7 [openjdk-jre-bin-17] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm [2] openjdk-jre-bin-17 The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli: HEAD of ::gentoo commit bb72f9ff93fa2d5b553f5ae535113118618d0660 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Fri Aug 12 03:03:55 2022 +0000 2022-08-12 03:03:54 UTC emerge -qpvO sci-biology/velvet [ebuild N ] sci-biology/velvet-1.2.10 USE="-doc -openmp"