Bug 832802

Summary:	sci-libs/gdal-3.4.1 - /.../ld: .../libgdal.so: undefined reference to jpeg_vsiio_dest(jpeg_compress_struct , _IO_FILE )
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Sci-geo Project <sci-geosciences>
Status:	RESOLVED OBSOLETE
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-libs:gdal-3.4.1:20220206-081854.log.bz2 temp.tar.bz2

Description Toralf Förster gentoo-dev

2022-02-06 10:46:40 UTC

too long lines were shrinked:

/bin/sh /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/libtool --mode=compile --silent --tag=CXX x86_64-pc-linux-gnu-g++ -iquote /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/port -iquote /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/gcore -iquote /var/tmp/portage/sci-libs/gdal-3
/bin/sh /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/libtool --mode=compile --silent --tag=CXX x86_64-pc-linux-gnu-g++ -iquote /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/port -iquote /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/gcore -iquote /var/tmp/portage/sci-libs/gdal-3
/bin/sh /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/libtool --mode=compile --silent --tag=CXX x86_64-pc-linux-gnu-g++ -iquote /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/port -iquote /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/gcore -iquote /var/tmp/portage/sci-libs/gdal-3
/bin/sh /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/libtool --mode=link --silent x86_64-pc-linux-gnu-g++ -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 gdalinfo_bin.lo  /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/libgdal.la  -o gdalinfo
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/.libs/libgdal.so: undefined reference to `jpeg_vsiio_dest(jpeg_compress_struct*, _IO_FILE*)'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.1/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-libs/gdal-3.4.1/work/gdal-3.4.1/.libs/libgdal.so: undefined reference to `jpeg_vsiio_src(jpeg_decompress_struct*, _IO_FILE*)'
collect2: error: ld returned 1 exit status

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma_systemd-j4-20220204-233257

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.1 *
clang/llvm (if any):
/usr/lib/llvm/13
13.0.1
Python 3.9.10
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems)
  [3]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.58.1 *
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 11.0.14_p9 [openjdk-bin-11]
2)	Eclipse Temurin JDK 8.322_p06 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-bin-8 
  [2]   openjdk-bin-11  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:

  HEAD of ::gentoo
commit c0847d7ab8f7159d04274aec87bd0e7058e91cb2
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sun Feb 6 06:51:27 2022 +0000

    2022-02-06 06:51:26 UTC

emerge -qpvO sci-libs/gdal
[ebuild  N    ] sci-libs/gdal-3.4.1  USE="aux-xml gif oracle pdf perl png python -armadillo -curl -debug (-doc) -fits -geos -gml -hdf5 -heif -java -jpeg -jpeg2k -lzma -mdb -mysql -netcdf -odbc -ogdi -opencl -postgres -spatialite -sqlite -threads -webp -xls -zstd" CPU_FLAGS_X86="avx sse ssse3" PYTHON_TARGETS="python3_9 -python3_8 -python3_10"

Comment 1 Toralf Förster gentoo-dev

2022-02-06 10:46:43 UTC

Created attachment 764462 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2022-02-06 10:46:46 UTC

Created attachment 764463 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2022-02-06 10:46:47 UTC

Created attachment 764464 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2022-02-06 10:46:48 UTC

Created attachment 764465 [details]
etc.portage.tar.bz2

Comment 5 Toralf Förster gentoo-dev

2022-02-06 10:46:49 UTC

Created attachment 764466 [details]
logs.tar.bz2

Comment 6 Toralf Förster gentoo-dev

2022-02-06 10:46:50 UTC

Created attachment 764467 [details]
sci-libs:gdal-3.4.1:20220206-081854.log.bz2

Comment 7 Toralf Förster gentoo-dev

2022-02-06 10:46:52 UTC

Created attachment 764468 [details]
temp.tar.bz2

Comment 8 Sam James archtester

2022-07-09 05:20:50 UTC

Obsolete given move to CMake in stable now.