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Bug 829566

Summary: sys-devel/bison-3.8.2 fails to build; ACCESS DENIED fopen_wr: /proc/self/coredump_filter
Product: Gentoo Linux Reporter: Alexander Veit <gentoo>
Component: Current packagesAssignee: Gentoo's Team for Core System packages <base-system>
Status: UNCONFIRMED ---    
Severity: normal CC: jstein, sam
Priority: Normal    
Version: unspecified   
Hardware: All   
OS: Linux   
See Also: https://bugs.gentoo.org/show_bug.cgi?id=711804
Whiteboard:
Package list:
Runtime testing required: ---
Attachments: Build log
config.log

Description Alexander Veit 2021-12-18 13:42:43 UTC
Emerge fails with an error in sys-devel/bison-3.8.2.




Reproducible: Always

Steps to Reproduce:
1. emerge --sync && emerge --ask --update --newuse --deep @world

Actual Results:  
Emerge fails

Expected Results:  
Emerge should update packages.

Fails with both

java -version
openjdk version "11.0.12" 2021-07-20
OpenJDK Runtime Environment Temurin-11.0.12+7 (build 11.0.12+7)
OpenJDK 64-Bit Server VM Temurin-11.0.12+7 (build 11.0.12+7, mixed mode)

and

java -version
java version "1.8.0_192"
Java(TM) SE Runtime Environment (build 1.8.0_192-b12)
Java HotSpot(TM) 64-Bit Server VM (build 25.192-b12, mixed mode)

emerge --info
Portage 3.0.28 (python 3.9.9-final-0, default/linux/amd64/17.1, gcc-10.3.0, glibc-2.33-r7, 5.10.27-gentoo x86_64)
=================================================================
System uname: Linux-5.10.27-gentoo-x86_64-Intel-R-_Atom-TM-_CPU_C2750_@_2.40GHz-with-glibc2.33
KiB Mem:    16386068 total,    339484 free
KiB Swap:   20971516 total,  18973436 free
Timestamp of repository gentoo: Sat, 18 Dec 2021 13:00:01 +0000
Head commit of repository gentoo: a2168c22bae960d4d79bb33d115530fce052b2b5
sh bash 5.1_p8
ld GNU ld (Gentoo 2.35.2 p1) 2.35.2
app-misc/pax-utils:        1.3.3::gentoo
app-shells/bash:           5.1_p8::gentoo
dev-lang/perl:             5.34.0-r3::gentoo
dev-lang/python:           3.9.9::gentoo, 3.10.0_p1::gentoo
dev-lang/rust:             1.56.1::gentoo
dev-util/cmake:            3.20.5::gentoo
dev-util/meson:            0.59.4::gentoo
sys-apps/baselayout:       2.7-r3::gentoo
sys-apps/openrc:           0.44.9::gentoo
sys-apps/sandbox:          2.25::gentoo
sys-devel/autoconf:        2.69-r5::gentoo, 2.71-r1::gentoo
sys-devel/automake:        1.13.4-r2::gentoo, 1.16.4::gentoo
sys-devel/binutils:        2.35.2::gentoo, 2.36.1-r2::gentoo, 2.37_p1::gentoo
sys-devel/binutils-config: 5.4::gentoo
sys-devel/gcc:             10.3.0-r2::gentoo, 11.2.0::gentoo
sys-devel/gcc-config:      2.4::gentoo
sys-devel/libtool:         2.4.6-r6::gentoo
sys-devel/llvm:            11.1.0::gentoo, 12.0.1::gentoo, 13.0.0::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.10-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.33-r7::gentoo
Repositories:

gentoo  
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts:
    sync-rsync-verify-max-age: 24

localrepo
    location: /usr/local/portage
    masters: gentoo

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE NPSL"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=silvermont -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=silvermont -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="rsync://mirror.eu.oneandone.net/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl acpi amd64 bzip2 cairo cdb cli crypt curl dbm ffmpeg fftw fortran gdbm git gzip hddtemp hdf5 iconv idn imap ipv6 libglvnd libtirpc lmdb lzma maildir mmap multilib ncurses nls nptl nptlonly openmp pam pcre png readline sasl seccomp split-usr ssl svg unicode usb vim-syntax xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EMERGE_DEFAULT_OPTS, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Alexander Veit 2021-12-18 13:43:31 UTC
Created attachment 759589 [details]
Build log
Comment 2 Mike Gilbert gentoo-dev 2021-12-18 17:32:47 UTC
I suspect your javac is crashing and trying to collect a coredump.

Anyway, we should probably disable this automagic dep.
Comment 3 Mike Gilbert gentoo-dev 2021-12-18 17:45:59 UTC
Please attach config.log.
Comment 4 Alexander Veit 2021-12-22 21:36:19 UTC
Created attachment 760132 [details]
config.log
Comment 5 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-12-23 06:18:26 UTC
Have you got a Java in /java?

configure:12444: result: no
configure:12534: checking for Java compiler
configure:12790: found /java/jdk11/bin/javac
configure:12941: javac -d . conftest.java
configure:12970: javac -target 1.7 -d . conftest.java

It's using that rather than any system copy.
Comment 6 Alexander Veit 2021-12-28 20:58:39 UTC
There's a JDK 8 in /java/jdk8 and a JDK 11 in /java/jdk11. As written before, emerge fails with both.
Comment 7 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-12-28 21:28:18 UTC
(In reply to Alexander Veit from comment #6)
> There's a JDK 8 in /java/jdk8 and a JDK 11 in /java/jdk11. As written
> before, emerge fails with both.

I don't see where you wrote that you're using a Java from outside of Portage.