| Summary: | sci-libs/netcdf-4.8.1-r1 - /.../hdf5debug.c: fatal error: execinfo.h: No such file or directory | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Toralf Förster <toralf> |
| Component: | Current packages | Assignee: | Gentoo Science Related Packages <sci> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | jstein, sam |
| Priority: | Normal | Keywords: | PullRequest |
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: |
https://github.com/Unidata/netcdf-c/pull/1701 https://github.com/Unidata/netcdf-c/issues/1700 https://github.com/gentoo/gentoo/pull/26284 |
||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 430702, 856418 | ||
| Attachments: |
emerge-info.txt
emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-libs:netcdf-4.7.4:20211209-230820.log temp.tar.bz2 |
||
Created attachment 757937 [details]
emerge-info.txt
Created attachment 757938 [details]
emerge-history.txt
Created attachment 757939 [details]
environment
Created attachment 757940 [details]
etc.portage.tar.bz2
Created attachment 757941 [details]
logs.tar.bz2
Created attachment 757942 [details]
sci-libs:netcdf-4.7.4:20211209-230820.log
Created attachment 757943 [details]
temp.tar.bz2
tinderbox_musl has reproduced this issue with version 4.8.1-r1 - Updating summary. The bug has been closed via the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=400a204bea4aa72d51a0ef53260743c9f7ee0310 commit 400a204bea4aa72d51a0ef53260743c9f7ee0310 Author: brahmajit das <brahmajit.xyz@gmail.com> AuthorDate: 2022-07-15 10:13:20 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2022-07-15 12:46:42 +0000 sci-libs/netcdf: Fix musl missing execinfo.h check Check if execinfo.h is present before including the header. The check is preset in other parts of the souce code, here it was only being checked if it's WIN32 or CYGIWIN before including execinfo.h as a result build was failing on musl. Closes: https://bugs.gentoo.org/828677 Signed-off-by: brahmajit das <brahmajit.xyz@gmail.com> Closes: https://github.com/gentoo/gentoo/pull/26284 Signed-off-by: Sam James <sam@gentoo.org> .../files/netcdf-4.9.0-fix-musl-execinfo_h.patch | 46 ++++++++++++++++++++++ sci-libs/netcdf/netcdf-4.9.0.ebuild | 1 + 2 files changed, 47 insertions(+) |
too long lines were shrinked: [45/145] /usr/bin/x86_64-gentoo-linux-musl-gcc -DCURL_STATICLIB=1 -DENABLE_SET_LOG_LEVEL -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_CONFIG_H -DRELAX_COORD_BOUND -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/include -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/oc2 -I/var/tmp/port [46/145] /usr/bin/x86_64-gentoo-linux-musl-gcc -DCURL_STATICLIB=1 -DENABLE_SET_LOG_LEVEL -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_CONFIG_H -DRELAX_COORD_BOUND -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/include -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/oc2 -I/var/tmp/port FAILED: libhdf5/CMakeFiles/netcdfhdf5.dir/hdf5debug.c.o /usr/bin/x86_64-gentoo-linux-musl-gcc -DCURL_STATICLIB=1 -DENABLE_SET_LOG_LEVEL -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_CONFIG_H -DRELAX_COORD_BOUND -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/include -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/oc2 -I/var/tmp/portage/sci-l /var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/libhdf5/hdf5debug.c:9:10: fatal error: execinfo.h: No such file or directory 9 | #include <execinfo.h> | ^~~~~~~~~~~~ compilation terminated. [47/145] /usr/bin/x86_64-gentoo-linux-musl-gcc -DCURL_STATICLIB=1 -DENABLE_SET_LOG_LEVEL -DH5_BUILT_AS_DYNAMIC_LIB -DHAVE_CONFIG_H -DRELAX_COORD_BOUND -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/include -I/var/tmp/portage/sci-libs/netcdf-4.7.4/work/netcdf-c-4.7.4/oc2 -I/var/tmp/port ------------------------------------------------------------------- This is an stable amd64 chroot image at a tinderbox (==build bot) name: 17.0_musl_hardened-j4_stable-20211209-194823 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-gentoo-linux-musl-11.2.0 * Python 3.9.9 Available Rust versions: [1] rust-bin-1.56.1 * php cli: HEAD of ::gentoo commit 405da333b415c85be2ec5eb9b347a5e2ed74de71 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Thu Dec 9 22:22:06 2021 +0000 2021-12-09 22:22:02 UTC emerge -qpvO sci-libs/netcdf [ebuild N ] sci-libs/netcdf-4.7.4 USE="dap examples hdf5 -doc -hdf -mpi -szip -test -tools"