Bug 822867 – dev-python/statsmodels-0.13.0 fails test on amd64

• Product: Gentoo Linux
• Status: RESOLVED OBSOLETE

[Description Jakov Smolić 2021-11-10 12:09:31 UTC]

Created attachment 750147 [details]
build log

============================================================================================== short test summary info ==============================================================================================
FAILED lib/statsmodels/stats/tests/test_corrpsd.py::test_corrpsd_threshold[0] - AssertionError: 
================================================================ 1 failed, 16013 passed, 713 skipped, 127 xfailed, 321 warnings in 140.29s (0:02:20) ================================================================
pytest-xprocess reminder::Be sure to terminate the started process by running 'pytest --xkill' if you have not explicitly done so in your fixture with 'xprocess.getinfo(<process_name>).terminate()'.
 * ERROR: dev-python/statsmodels-0.13.0::gentoo failed (test phase):
 *   tests fail with python3.9
 * 
 * Call stack:
 *     ebuild.sh, line  127:  Called src_test
 *   environment, line 2969:  Called distutils-r1_src_test
 *   environment, line 1238:  Called _distutils-r1_run_foreach_impl 'python_test'
 *   environment, line  500:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2590:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2055:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2053:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test'
 *   environment, line  792:  Called distutils-r1_run_phase 'python_test'
 *   environment, line 1177:  Called python_test
 *   environment, line 2909:  Called die

# emerge --info 
Portage 3.0.28 (python 3.9.8-final-0, default/linux/amd64/17.1/systemd, gcc-11.2.0, glibc-2.33-r7, 5.10.68-gentoo-dist x86_64)
=================================================================
System uname: Linux-5.10.68-gentoo-dist-x86_64-Common_KVM_processor-with-glibc2.33
KiB Mem:    65850768 total,  24465444 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Wed, 10 Nov 2021 11:30:01 +0000
Head commit of repository gentoo: 417cd6c1aab2cfbc74f85a788973f9a484944218
Head commit of repository sakaki-tools: 571e34870d665e98677caecbd56cf0d399ee4b3c

sh bash 5.1_p8
ld GNU ld (Gentoo 2.37_p1 p0) 2.37
distcc 3.4 x86_64-pc-linux-gnu [disabled]
app-shells/bash:          5.1_p8::gentoo
dev-lang/perl:            5.34.0-r5::gentoo
dev-lang/python:          2.7.18_p13::gentoo, 3.9.8::gentoo, 3.10.0_p1::gentoo
dev-lang/rust-bin:        1.56.1::gentoo
dev-util/cmake:           3.21.4::gentoo
sys-apps/baselayout:      2.8::gentoo
sys-apps/sandbox:         2.29::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.71-r1::gentoo
sys-devel/automake:       1.16.5::gentoo
sys-devel/binutils:       2.37_p1::gentoo
sys-devel/gcc:            11.2.0::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.14::gentoo (virtual/os-headers)
sys-libs/glibc:           2.33-r7::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts:
    sync-rsync-verify-metamanifest: yes

sakaki-tools
    location: /usr/local/portage/sakaki-tools
    sync-type: git
    sync-uri: https://github.com/sakaki-/sakaki-tools.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* @FREE @BINARY-REDISTRIBUTABLE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--jobs 10"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j64 -l64"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc multilib ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl systemd udev unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS