Bug 820158

Summary:	sci-libs/hdf5-1.12.2-r2 : "h5cc -show" produces invalid output
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Andreas K. Hüttel <dilfridge>
Status:	RESOLVED FIXED
Severity:	normal	CC:	sci
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
See Also:	https://bugs.gentoo.org/show_bug.cgi?id=813924 https://bugs.gentoo.org/show_bug.cgi?id=863089 https://github.com/mesonbuild/meson/pull/12748 https://github.com/HDFGroup/hdf5/issues/1814 https://github.com/Homebrew/homebrew-core/issues/159691
Whiteboard:	was: sci-visualization/gwyddion-2.56 - Makefile:<snip>: missing separator. Stop.
Package list:		Runtime testing required:	---
Bug Depends on:	862399
Bug Blocks:
Attachments:	emerge-info.txt emerge-history.txt environment etc.portage.tar.bz2 logs.tar.bz2 sci-visualization:gwyddion-2.56:20211025-060605.log temp.tar.bz2

Description Toralf Förster gentoo-dev

2021-10-25 08:08:17 UTC

>>> Compiling source in /var/tmp/portage/sci-visualization/gwyddion-2.56/work/gwyddion-2.56 ...
make -j4 
Makefile:331: *** missing separator.  Stop.
 * ERROR: sci-visualization/gwyddion-2.56::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-visualization/gwyddion-2.56::gentoo'`,

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma_systemd-j4-20211018-093750

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
clang version 13.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/13/bin
/usr/lib/llvm/13
13.0.0
Python 3.9.7
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby27 (with Rubygems)
  [3]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.56.0
  [2]   rust-1.56.0 *
The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:

  HEAD of ::gentoo
commit afdd5798f88fb1a82b831f97a468ab5f5fc11bd1
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Mon Oct 25 04:52:05 2021 +0000

    2021-10-25 04:52:04 UTC

emerge -qpvO sci-visualization/gwyddion
[ebuild  N    ] sci-visualization/gwyddion-2.56  USE="X gnome hdf5 nls openexr perl xml -doc -fits -ruby -sourceview"

Comment 1 Toralf Förster gentoo-dev

2021-10-25 08:08:18 UTC

Created attachment 746571 [details]
emerge-info.txt

Comment 2 Toralf Förster gentoo-dev

2021-10-25 08:08:21 UTC

Created attachment 746574 [details]
emerge-history.txt

Comment 3 Toralf Förster gentoo-dev

2021-10-25 08:08:23 UTC

Created attachment 746577 [details]
environment

Comment 4 Toralf Förster gentoo-dev

2021-10-25 08:08:24 UTC

Created attachment 746580 [details]
etc.portage.tar.bz2

Comment 5 Toralf Förster gentoo-dev

2021-10-25 08:08:25 UTC

Created attachment 746583 [details]
logs.tar.bz2

Comment 6 Toralf Förster gentoo-dev

2021-10-25 08:08:26 UTC

Created attachment 746586 [details]
sci-visualization:gwyddion-2.56:20211025-060605.log

Comment 7 Toralf Förster gentoo-dev

2021-10-25 08:08:27 UTC

Created attachment 746589 [details]
temp.tar.bz2

Comment 8 Toralf Förster gentoo-dev

2022-04-24 12:50:03 UTC

same for ~2.60

Comment 9 Andreas K. Hüttel archtester

2022-07-30 20:42:16 UTC

gwyddion calls h5cc for obtaining information on hdf5. 

However, "h5cc -show" fails... 

huettel@pinacolada ~ $ LANG=en_US h5cc -show
/usr/h5cc
dir is /usr
x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-show'
huettel@pinacolada ~ $

Comment 10 Sam James archtester

2022-07-30 20:52:11 UTC

(In reply to Andreas K. Hüttel from comment #9)
> gwyddion calls h5cc for obtaining information on hdf5. 
> 
> However, "h5cc -show" fails... 
> 
> huettel@pinacolada ~ $ LANG=en_US h5cc -show
> /usr/h5cc
> dir is /usr
> x86_64-pc-linux-gnu-gcc: error: unrecognized command-line option '-show'
> huettel@pinacolada ~ $

~arch hdf5 should be fixed. Their CMake build was broken.