| Summary: | sci-chemistry/gromacs-2021.3: src/gromacs/hardware/identifyavx512fmaunits.cpp:180:5: error: the register ‘zmm11’ cannot be clobbered in ‘asm’ for the current target | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Sam James <sam> |
| Component: | Current packages | Assignee: | Alexey Shvetsov <alexxy> |
| Status: | RESOLVED FIXED | ||
| Severity: | normal | CC: | pacho, sci-chemistry |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | x86 | ||
| OS: | Linux | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Bug Depends on: | |||
| Bug Blocks: | 814101 | ||
| Attachments: | build.log.xz | ||
Created attachment 744843 [details]
build.log.xz
Maybe we should not have +custom-cflags default on?
Fails with -custom-cflags with:
> Invalid value for GMX_SIMD: . Pick one of: AUTO, None, SSE2, SSE4.1,
> AVX_128_FMA, AVX_256, AVX2_256, AVX2_128, AVX_512, AVX_512_KNL, MIC,
> ARM_NEON, ARM_NEON_ASIMD, ARM_SVE, IBM_VMX, IBM_VSX, Sparc64_HPC_ACE,
> Reference
>Call Stack (most recent call first):
> CMakeLists.txt:209 (gmx_option_multichoice)
The bug has been referenced in the following commit(s): https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8e60fd5146783f1e3949121a11ffaa4dbacfe277 commit 8e60fd5146783f1e3949121a11ffaa4dbacfe277 Author: Sam James <sam@gentoo.org> AuthorDate: 2021-10-14 06:23:49 +0000 Commit: Sam James <sam@gentoo.org> CommitDate: 2021-10-14 06:23:49 +0000 sci-chemistry/gromacs: fix configure with -custom-cflags Need to default to AUTO and let it be overridden as appropriate later. Bug: https://bugs.gentoo.org/818055 Signed-off-by: Sam James <sam@gentoo.org> sci-chemistry/gromacs/gromacs-2021.3.ebuild | 3 ++- sci-chemistry/gromacs/gromacs-2021.9999.ebuild | 3 ++- sci-chemistry/gromacs/gromacs-9999.ebuild | 3 ++- 3 files changed, 6 insertions(+), 3 deletions(-) What is pending here? Thanks |
/var/tmp/portage/sci-chemistry/gromacs-2021.3/work/gromacs-2021.3/src/gromacs/hardware/identifyavx512fmaunits.cpp: In function ‘uint64_t gmx::{anonymous}::timeFmaOnlyLoop(uint64_t)’: /var/tmp/portage/sci-chemistry/gromacs-2021.3/work/gromacs-2021.3/src/gromacs/hardware/identifyavx512fmaunits.cpp:180:5: error: the register ‘zmm11’ cannot be clobbered in ‘asm’ for the current target 180 | __asm__ __volatile__( | ^~~~~~~ /var/tmp/portage/sci-chemistry/gromacs-2021.3/work/gromacs-2021.3/src/gromacs/hardware/identifyavx512fmaunits.cpp: In function ‘int gmx::identifyAvx512FmaUnits()’: /var/tmp/portage/sci-chemistry/gromacs-2021.3/work/gromacs-2021.3/src/gromacs/hardware/identifyavx512fmaunits.cpp:88:5: error: the register ‘zmm30’ cannot be clobbered in ‘asm’ for the current target 88 | __asm__ __volatile__( | ^~~~~~~ At global scope: cc1plus: note: unrecognized command-line option ‘-Wno-unused-command-line-argument’ may have been intended to silence earlier diagnostics ninja: build stopped: subcommand failed. * ERROR: sci-chemistry/gromacs-2021.3::gentoo failed (compile phase): * ninja -v -j9 -l9 failed ---- # emerge --info Portage 3.0.20 (python 3.9.6-final-0, default/linux/x86/17.0/desktop/plasma, gcc-11.2.0, glibc-2.33-r1, 5.10.52-gentoo-dist i686) ================================================================= System uname: Linux-5.10.52-gentoo-dist-i686-Intel-R-_Xeon-R-_CPU_E5-2620_v4_@_2.10GHz-with-glibc2.33 KiB Mem: 16393948 total, 1924304 free KiB Swap: 4194268 total, 4068060 free Timestamp of repository gentoo: Thu, 14 Oct 2021 04:36:30 +0000 sh bash 5.1_p8 ld GNU ld (Gentoo 2.37_p1 p0) 2.37 app-shells/bash: 5.1_p8::gentoo dev-lang/perl: 5.34.0-r2::gentoo dev-lang/python: 3.8.12::gentoo, 3.9.6_p2::gentoo dev-lang/rust-bin: 1.53.0::gentoo dev-util/cmake: 3.20.5::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/openrc: 0.43.5::gentoo sys-apps/sandbox: 2.24::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.4::gentoo sys-devel/binutils: 2.37_p1::gentoo sys-devel/gcc: 10.3.0-r2::gentoo, 11.2.0::gentoo sys-devel/gcc-config: 2.4::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r1::gentoo Repositories: gentoo location: /bound/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: Binary Repositories: binhost priority: 9999 sync-uri: https://gentoo.osuosl.org/experimental/amd64/binpkg/default/linux/17.1/x86-64 ACCEPT_KEYWORDS="x86" ACCEPT_LICENSE="*" CBUILD="i686-pc-linux-gnu" CFLAGS="-O2 -march=i686 -pipe -fdiagnostics-color=always -frecord-gcc-switches" CHOST="i686-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt /var/spool/munin-async/.ssh" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -march=i686 -pipe -fdiagnostics-color=always -frecord-gcc-switches" DISTDIR="/bound/distfiles" EMERGE_DEFAULT_OPTS="--complete-graph --keep-going=y --deep --with-bdeps=y --getbinpkg=n --usepkg=n" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -march=i686 -pipe -fdiagnostics-color=always -frecord-gcc-switches" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs cgroup config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -march=i686 -pipe -fdiagnostics-color=always -frecord-gcc-switches" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf8" LDFLAGS="-O2 -march=i686 -pipe -fdiagnostics-color=always -frecord-gcc-switches -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j9 -l9" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi activities alsa bluetooth branding bzip2 cairo cdda cdr cli crypt cups dbus declarative dri dts dvd dvdr elogind emboss encode exif flac fortran gdbm gif gpm graphite gtk gui hardened iconv icu ipv6 jpeg kde kipi kwallet lcms libglvnd libnotify libtirpc mad mng mp3 mp4 mpeg ncurses nls nptl objc objc++ ogg opengl openmp pam pango pcre pdf plasma png policykit polkit ppds qml qt5 readline sdl seccomp semantic-desktop spell split-usr ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wayland widgets wxwidgets x264 x86 xattr xcb xml xv xvid zlib" ABI_X86="32" ADA_TARGET="gnat_2021" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1 emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="framebuffer" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9 python3_7 python3_8" RUBY_TARGETS="ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS