Bug 812242

Summary:	sci-biology/pysam-0.16.0.1 - /usr/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 supp
Product:	Gentoo Linux	Reporter:	Toralf Förster <toralf>
Component:	Current packages	Assignee:	Gentoo Science Biology related packages <sci-biology>
Status:	RESOLVED FIXED
Severity:	normal
Priority:	Normal
Version:	unspecified
Hardware:	All
OS:	Linux
Whiteboard:
Package list:		Runtime testing required:	---
Bug Depends on:
Bug Blocks:	812149
Attachments:	emerge-history.txt etc.portage.tar.bz2 sci-biology:pysam-0.16.0.1:20210909-071245.log

Description Toralf Förster gentoo-dev

2021-09-09 07:20:28 UTC

/usr/lib/python3.9/site-packages/setuptools/lib2to3_ex.py:36: SetuptoolsDeprecationWarning: 2to3 support is deprecated. If the project still requires Python 2 support, please migrate to a single-codebase solution or employ an independent conversion process.

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_gnome_systemd-j4-20210906-091318

  -------------------------------------------------------------------

  The output of emerge matches a pattern requested by a Gentoo dev.

Comment 1 Toralf Förster gentoo-dev

2021-09-09 07:20:30 UTC

Created attachment 738502 [details]
emerge-history.txt

Comment 2 Toralf Förster gentoo-dev

2021-09-09 07:20:31 UTC

Created attachment 738505 [details]
etc.portage.tar.bz2

Comment 3 Toralf Förster gentoo-dev

2021-09-09 07:20:33 UTC

Created attachment 738508 [details]
sci-biology:pysam-0.16.0.1:20210909-071245.log

Comment 4 Larry the Git Cow gentoo-dev

2021-10-09 09:32:35 UTC

The bug has been referenced in the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=1c82ccd2949ea6d046c696906c83464ea9f43ec9

commit 1c82ccd2949ea6d046c696906c83464ea9f43ec9
Author:     Arthur Zamarin <arthurzam@gentoo.org>
AuthorDate: 2021-10-09 08:52:39 +0000
Commit:     Arthur Zamarin <arthurzam@gentoo.org>
CommitDate: 2021-10-09 09:31:29 +0000

    sci-biology/pysam: block <setuptools-58 for 0.16.0.1
    
    Was fixed for 0.17.0
    
    Bug: https://bugs.gentoo.org/812242
    Signed-off-by: Arthur Zamarin <arthurzam@gentoo.org>

 .../pysam/{pysam-0.16.0.1.ebuild => pysam-0.16.0.1-r1.ebuild}     | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

Comment 5 Larry the Git Cow gentoo-dev

2021-10-11 14:55:23 UTC

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3b93bba18c14598747eda127476f093040e6b3b6

commit 3b93bba18c14598747eda127476f093040e6b3b6
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2021-10-11 14:55:08 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2021-10-11 14:55:08 +0000

    sci-biology/pysam: drop 0.16.0.1-r1
    
    Closes: https://bugs.gentoo.org/812242
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/pysam/Manifest                         |  1 -
 .../pysam/files/pysam-0.16.0.1-fix-tests.patch     | 37 -------------
 sci-biology/pysam/pysam-0.16.0.1-r1.ebuild         | 60 ----------------------
 3 files changed, 98 deletions(-)