| Summary: | sci-chemistry/avogadro2-1.93.0: cmake doesn't find libGLEW.so under lib64 | ||
|---|---|---|---|
| Product: | Gentoo Linux | Reporter: | Pacho Ramos <pacho> |
| Component: | Current packages | Assignee: | Gentoo Chemistry-Related Packages <sci-chemistry> |
| Status: | RESOLVED WORKSFORME | ||
| Severity: | normal | CC: | asturm, sam |
| Priority: | Normal | ||
| Version: | unspecified | ||
| Hardware: | All | ||
| OS: | Linux | ||
| See Also: | https://bugs.gentoo.org/show_bug.cgi?id=834325 | ||
| Whiteboard: | |||
| Package list: | Runtime testing required: | --- | |
| Attachments: |
build.log.gz
CMakeCache.txt |
||
I don't see any references to glew in the upstream repo. Could you try bumping it then we can investigate? (In reply to Sam James from comment #1) > I don't see any references to glew in the upstream repo. Could you try > bumping it then we can investigate? (And then upload the full build.log, emerge --info, and CMake*.txt) Created attachment 734728 [details]
build.log.gz
It was the same with the bumped version :(
Created attachment 734731 [details]
CMakeCache.txt
Portage 3.0.22 (python 3.9.6-final-0, default/linux/amd64/17.1/desktop/gnome/systemd, gcc-10.3.0, glibc-2.33-r1, 5.10.55-gentoo x86_64) ================================================================= System uname: Linux-5.10.55-gentoo-x86_64-Intel-R-_Core-TM-_i7-7700HQ_CPU_@_2.80GHz-with-glibc2.33 KiB Mem: 16036320 total, 5630852 free KiB Swap: 5240828 total, 4997420 free Timestamp of repository gentoo: Wed, 18 Aug 2021 07:00:01 +0000 Head commit of repository gentoo: 32a319b70c864bf0eaadb52e3bf4b9c77777a260 sh bash 5.1_p8 ld GNU ld (Gentoo 2.35.2 p1) 2.35.2 ccache version 4.3 [enabled] app-shells/bash: 5.1_p8::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0::gentoo dev-lang/python: 2.7.18_p11::gentoo, 3.8.11::gentoo, 3.9.6_p1::gentoo dev-lang/rust-bin: 1.53.0::gentoo dev-util/ccache: 4.3-r3::gentoo dev-util/cmake: 3.20.5::gentoo sys-apps/baselayout: 2.7::gentoo sys-apps/openrc: 0.42.1-r1::gentoo sys-apps/sandbox: 2.24::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo sys-devel/automake: 1.16.3-r1::gentoo sys-devel/binutils: 2.35.2::gentoo sys-devel/gcc: 10.3.0-r2::gentoo sys-devel/gcc-config: 2.4::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.10::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r1::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-metamanifest: no x-portage location: /usr/local/portage masters: gentoo priority: 0 guru location: /hdd/portage/local/layman/guru masters: gentoo priority: 50 science location: /hdd/portage/local/layman/science masters: gentoo priority: 50 torbrowser location: /hdd/portage/local/layman/torbrowser masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=native -fno-stack-protector" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /opt/cxoffice/etc/cxoffice.conf /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=native -fno-stack-protector" DISTDIR="/hdd/distfiles" EMERGE_DEFAULT_OPTS="--quiet-build=n --autounmask-write --keep-going --autounmask=y --with-test-deps" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -march=native -fno-stack-protector" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs ccache cgroup compress-build-logs compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=native -fno-stack-protector" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="es_ES.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu" LINGUAS="es es_ES en en_US fr fr_FR" MAKEOPTS="-j9" PKGDIR="/hdd/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="7z 7zip X a52 aac acl acpi alsa amd64 appindicator applet aptx archive aribsub avahi avx avx256 ayatana bash-completion bluetooth bluray branding btrfs bzip2 cairo ccache cdda cddb cdr chm chrome chromecast chromium cli colord context crypt cuda cups cvs dbus dell djvu dot dri dts dvd dvdr dvi ebook eds emboss enchant encode epspdf epub equalizer ethernet evince evo excel exif fat ffmpeg firefox flac flash fortran fuse games gdbm gdk-pixbuf gdm gedit gif gimp git gnome gnome-keyring gnome-online-accounts gnome-shell gnumeric google googledrive gphoto2 gpm grammar gromacs gstreamer gtk gtk3 gtkstyle gui heif hfs html http hwaccel ico icons iconv icu indicator inkscape inotify introspection ios ipod irc iso jabber jpeg jumbo-build kate kpathsea latex lcms libass libdrm libglvnd libindicate libnotify librtmp libsecret libtirpc libv4l libvisual lm_sensors loudness luatex lyx lz4 lzma lzo mad math matroska media mediaplayer metric microdns mms mmx mmxext mng mobi monolithic-build mp3 mp4 mpeg mtp multilib music musicbrainz nautilus ncurses network network-cron networkmanager nls nptl ntfs ntp numa nvenc nvidia nvme oauth offensive ogg opengl openmp openvpn optimized-qmake opus pam pango pch pdf pdfannotextractor pdfimport pipelight png policykit postscript ppapi ppds pptx projectm proprietary-codecs pstricks publishers pulseaudio qt5 rar raw rdp readline reiserfs rtf rtmp scanner screencast sdl seccomp sendto sftp skins slideshow smp sna snmp sox spell split-usr squashfs sse sse2 sse3 sse4 sse4_1 ssh ssl ssse3 startup-notification subtitles svg sysprof systemd t1lib tcpd theora thesaurus threads tiff totem tracker truetype udev udisks uefi unicode update_drivedb upnp upnp-av upower usb user-session v4l vaapi vala vcd vdpau vector-icons vimeo visio vlc vnc vorbis vpx wayland webp wifi wma wmf wpg wxwidgets x264 x265 xattr xcb xephyr xetex xfs xft xml xmp xmpp xpm xps xv xvid xz youtube zeroconf zfs zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2018" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput wacom" KERNEL="linux" L10N="es es-ES en en-US fr fr-FR" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python2_7 python3_9 python3_10" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="fbdev vesa intel i965 nouveau nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS Pacho, if this was a system switched over from <17.1 profile at some point, then it may have been bug 644538 hitting you locally, which is only fixable by rebuilding dependencies. it seems it works now :/ Thanks for the heads up! |
I don't know why cmake tries to find it under /usr/lib instead of /usr/lib64 >>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/avogadro2-1.93.0/work/avogadro2-1.93.0_build" ninja -v -j9 -l0 ninja: error: '/usr/lib/libGLEW.so', needed by 'bin/avogadro2', missing and no known rule to make it * ERROR: sci-chemistry/avogadro2-1.93.0::gentoo failed (compile phase): * ninja -v -j9 -l0 failed * * Call stack: * ebuild.sh, line 127: Called src_compile * environment, line 2538: Called cmake-utils_src_compile * environment, line 885: Called cmake-utils_src_make * environment, line 1069: Called _cmake_ninja_src_make * environment, line 479: Called eninja * environment, line 1396: Called die * The specific snippet of code: * "$@" || die "${nonfatal_args[@]}" "${*} failed" * * If you need support, post the output of `emerge --info '=sci-chemistry/avogadro2-1.93.0::gentoo'`, * the complete build log and the output of `emerge -pqv '=sci-chemistry/avogadro2-1.93.0::gentoo'`. * The complete build log is located at '/var/log/portage/build/sci-chemistry/avogadro2-1.93.0:20210818-175108.log.gz'. * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/avogadro2-1.93.0/temp/build.log.gz'. * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/avogadro2-1.93.0/temp/environment'. * Working directory: '/var/tmp/portage/sci-chemistry/avogadro2-1.93.0/work/avogadro2-1.93.0_build' * S: '/var/tmp/portage/sci-chemistry/avogadro2-1.93.0/work/avogadroapp-1.93.0' @cmake maintainers: what is the proper way to change libdir used by cmake? Thanks a lot